View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14314_low_2 (Length: 541)
Name: NF14314_low_2
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14314_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 243 - 521
Target Start/End: Original strand, 19596963 - 19597241
Alignment:
| Q |
243 |
catgaactcccttaccacgtaagaaagatagaaaacacaagaggttgcggcaaaggctatgaagatttcaactggatcaatgatctgcatattatgttgt |
342 |
Q |
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| T |
19596963 |
catgaactcccttaccacgtaagaaagatagaaaacacaagaggttgcggcaaagactatgaagatttcaattggatcaatgatctgcatattatcttgt |
19597062 |
T |
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| Q |
343 |
tcattagattgtgatgctcttcgtaatggtgatgatggtggtgatactgttggtgatggtgttgatggtcgtcctagtgggtatcttctagggatcactg |
442 |
Q |
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| T |
19597063 |
tcattagattgcgatgctcttcgtaatggtgatgatggtggtgatactgttggtgatggtgttgatggtcgtcctgatgggtatcttctagggatcactg |
19597162 |
T |
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| Q |
443 |
aatgatatattggtggtgggttcactgaacgaggccatggaggacgaatgtgactcgatgaaaaattagaatggtatgg |
521 |
Q |
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| T |
19597163 |
aatgatatattggtggtgggttcactgaacgaggccatggaggacgaatgtgactcgatgaaaaattagaatggtatgg |
19597241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 19596743 - 19596915
Alignment:
| Q |
21 |
catgatcatatctcctgaaaatgtaactaatatgtaaatttgaacatctttattcactcctcaatcttcttcattcattcctcaatcttctttgaattgt |
120 |
Q |
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| T |
19596743 |
catgatcatatctcctgaaaatgtaactaatatgtaaatttgaatatctttattcactccttaatcttcttcattcattcctcaatcttctttgaattgt |
19596842 |
T |
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| Q |
121 |
ctgataatgtcaaaaatctgaaacaacaataatataattaattaacaactcatagaacttcaccgaatattac |
193 |
Q |
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| T |
19596843 |
ctgataatgtgaaaaatctgaaacaacaataatataattaattaacaactgatagaacttcaccgaatattac |
19596915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 19597241 - 19597287
Alignment:
| Q |
365 |
gtaatggtgatgatggtggtgatactgttggtgatggtgttgatggt |
411 |
Q |
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| T |
19597241 |
gtaatggtgatgatggtggtgatactgttggtgatggtgttgatggt |
19597287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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