View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14314_low_20 (Length: 202)
Name: NF14314_low_20
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14314_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 5216358 - 5216524
Alignment:
| Q |
20 |
caaaacagtgattagattaattagcaaggaagtgtaattatgtaactaattaatcgggtttctgtttcatcgcttaggaaacaagataacggcttcattc |
119 |
Q |
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| T |
5216358 |
caaaacagtgattagattaattagcaaggaagtgtaattatgtaactaattaatcgggtttctgtttcattgcttaggaaacaagataacggcttcattc |
5216457 |
T |
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| Q |
120 |
gttcctataattatccatattgtttcacgttattatactttgaatatttcaaaactatgtacagcct |
186 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5216458 |
gttcctataattatgcatattgtttcacgttattatactttgaatatttcaaaactatgtacagcct |
5216524 |
T |
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