View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14314_low_4 (Length: 444)
Name: NF14314_low_4
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14314_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 42964270 - 42964684
Alignment:
| Q |
16 |
ggtatatatcaagatatcatctactagtttaaagcttaattataccttgaacttgctctagtatagaagccagcattaatggagctaccaccacccaaaa |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42964270 |
ggtatatatcatgatatcatctactagtttaaagcttaattataccttgaacttgctctagtatagaagccagcattaatggagctaccaccacccaaaa |
42964369 |
T |
|
| Q |
116 |
cccttgctcttgcattgaacactccatctgttgacaagaagaactgtgaagctgaagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42964370 |
cccttgctcttgcattgaacactccatctgttgacaagaagaactgtgaagctgaagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaa |
42964469 |
T |
|
| Q |
216 |
tgacacattggggtttgtgaaaggtactcctcctctttcaagcaacaaaacattgaagttttgtgagagggttgcagctaaagggcaccctgctgttcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42964470 |
tgacacattggggtttgtgaaaggtactcctcctctttcaagcaacaaaacattgaagttttgtgagagggttgcagctaaagggcaccctgctgttcca |
42964569 |
T |
|
| Q |
316 |
ccacctactattatgtagtcataaccatcatttgtgttggtggttgaaattgatggtggagatgagaatgaacttgcttttcttatgaaagggtatttat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42964570 |
ccacctactattatgtagtcataaccatcatttgtgttggtggttgaaattgatggtggagatgagaatgaacttgcttttcttatgaaagggtatttat |
42964669 |
T |
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| Q |
416 |
atccattgttcaagt |
430 |
Q |
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| T |
42964670 |
atccattgttcaagt |
42964684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 58 - 339
Target Start/End: Complemental strand, 5499728 - 5499447
Alignment:
| Q |
58 |
taccttgaacttgctctagtatagaagccagcattaatggagctaccaccacccaaaacccttgctcttgcattgaacactccatctgttgacaagaaga |
157 |
Q |
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|||||||| || |||||||||||||| |||||||| || |||||||||||||| ||||| ||| | ||||||||||| |||||||| ||||| | || |
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| T |
5499728 |
taccttgagctagctctagtatagaaaccagcattgatagagctaccaccacctaaaactcttccccttgcattgaaaactccatcagttgaaacaaaat |
5499629 |
T |
|
| Q |
158 |
actgtgaagctgaagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaatgacacattggggtttgtgaaaggtactcctcctctttcaag |
257 |
Q |
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| || ||||||||||||||||||| |||||||| ||||| || ||||| |||||||||| ||||| || || |||||||| || || ||||||||||| |
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| T |
5499628 |
attgagaagctgaagttggtgaaaggtctgccaaggtaatatggaagttctcaagaaatgttacatttggattagtgaaaggaacaccacctctttcaag |
5499529 |
T |
|
| Q |
258 |
caacaaaacattgaagttttgtgagagggttgcagctaaagggcaccctgctgttccaccacctactattatgtagtcataa |
339 |
Q |
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| T |
5499528 |
tactaatacactaaagttttgagataatgttgcagctaaaggacaccctgcagttccacctcccactattatgtaatcataa |
5499447 |
T |
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