View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_high_10 (Length: 460)
Name: NF14315_high_10
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 447
Target Start/End: Original strand, 4804223 - 4804666
Alignment:
| Q |
4 |
taggagctttttatatccgtgattgcaccaacttaattaataatgtagtgcaaagttatcaaatacatggttttgagtatatatacttagtacagggaat |
103 |
Q |
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| T |
4804223 |
taggagctttttatatccgtgattgcaccaacttaattaataatgtagtgcaaagttatcaaatacatggttttgagtatatatacttagtacagggaat |
4804322 |
T |
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| Q |
104 |
agtgaagggtgcacnnnnnnnnnttaagcactcccagaacgtcctttagctgatgggaaatgatatgatcaaattttgaaaaatttgttttccaattaac |
203 |
Q |
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| T |
4804323 |
agtgaagggtgcacaaaaaaaaattaagcactcccagaacgtcctttagctgatgggaaatgatatgatcaaattttgaaaaatttgttttccaattaac |
4804422 |
T |
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| Q |
204 |
attttttagttcaataacctatatacaattattcaaatcattttgagagctttaactaaatgagtagatatgcaagtggtacgcgtaaactaactttcaa |
303 |
Q |
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| T |
4804423 |
attttttagttcaataacctatatacaattattcaaatcattttgagagctttaactaaatgagtagatatgcaagtggtacgcctaaactaactttcaa |
4804522 |
T |
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| Q |
304 |
tttacttttaaatttgtttgagtctaaatttgattaaatcctaataaatcatcttcaattcttcaaatataactaaaaaccctatatattttacaaataa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4804523 |
tttacttttaaatttgtttgagtctaaatttgattaaatcctaataaatcatcttcaattcttcaaatataactaaaaaccctatatattttacaaataa |
4804622 |
T |
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| Q |
404 |
atattgtatgagatacatattttataaaacttattgttggattt |
447 |
Q |
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| T |
4804623 |
atattgtatgagatacatattttatgaaacttattgttggattt |
4804666 |
T |
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