View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_high_16 (Length: 405)
Name: NF14315_high_16
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 6947671 - 6948034
Alignment:
| Q |
18 |
catgcactctaatatatgttgctactaccatcaannnnnnnnactgaaggaatttccttatgttgatatgcagattcttgagtgcactcaatatttataa |
117 |
Q |
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| T |
6947671 |
catgcactctaatatatgttgctactaccatcaattttttttactgaaggaatttccttatgttgatatgcagattcatgagtgcactcaatatatataa |
6947770 |
T |
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| Q |
118 |
accgaaagaaaaacatgtactaagcataggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataat |
217 |
Q |
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| T |
6947771 |
accgaaagaaaaacatgtactaagcataggtaaatctacaatgcagttc-tttcatgatgaaaacgaagcgtaacataatatcccatgttaaaatataat |
6947869 |
T |
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| Q |
218 |
aatcaacaaaagcagtggcctcttaactatcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttca |
317 |
Q |
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| T |
6947870 |
aatcaac-aaagcagtggcc---------tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttca |
6947959 |
T |
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| Q |
318 |
cgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
392 |
Q |
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| T |
6947960 |
caacgaacttcctcatcttccttgggacggtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
6948034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 6950182 - 6950367
Alignment:
| Q |
61 |
ctgaaggaatttccttatgttgatatgcagattcttgagtgcactcaat-atttataaaccgaaagaa--aaacatgtactaagcataggtaaatcta-c |
156 |
Q |
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| T |
6950182 |
ctgaaggaatttgctcatgttgatatgcagattcatgaacgggctcaaacatacataaaccgaaacaacaaaacaagtaataagcatagataaatctaac |
6950281 |
T |
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| Q |
157 |
aatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
244 |
Q |
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| T |
6950282 |
aatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtctcttaac |
6950367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 389
Target Start/End: Complemental strand, 11160986 - 11160872
Alignment:
| Q |
275 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
374 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
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| Q |
375 |
ctaatctcctccggc |
389 |
Q |
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| T |
11160886 |
cgaatctcctccggc |
11160872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 297
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
266 |
tagagactaaaccctagactctaatcagtttt |
297 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 11179071 - 11179145
Alignment:
| Q |
311 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctc |
385 |
Q |
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| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctc |
11179145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 5647896 - 5647852
Alignment:
| Q |
113 |
tataaaccgaaagaaaaacatgtactaagcataggtaaatctaca |
157 |
Q |
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| T |
5647896 |
tataaatcgaaagaaaaacaagtactaagcataaataaatctaca |
5647852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 247 - 392
Target Start/End: Original strand, 661917 - 662062
Alignment:
| Q |
247 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
346 |
Q |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
347 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
392 |
Q |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttaccaatatcctccggcttc |
662062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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