View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_high_2 (Length: 626)
Name: NF14315_high_2
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 607
Target Start/End: Original strand, 41467922 - 41468513
Alignment:
| Q |
17 |
cctagctaactaacaatgcacgatcaagatgatgataaaagacaaaatgaagctacgtataggcttagtagtaagaactaagaagtagggtcacgaactt |
116 |
Q |
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| T |
41467922 |
cctagctaactaacaatgcacgatcaagatgatgataaaagacaaaatgaagctacgtataggcttagtagtaagaactaagaagtagggtcacgaactt |
41468021 |
T |
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| Q |
117 |
gnnnnnnngaacggttttgaataacaatgtcgtacatatgaaagtgcttaaaactactgaagtttcttgggagtgatagaaggtgtggagatgtgtctga |
216 |
Q |
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| T |
41468022 |
gaaaaaaagaacggttttgaataacaatgtcgtacatatgaaagtgcttaaaactattgaagtttcttgggagtgatagaaggtgtggagatgtgtctga |
41468121 |
T |
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| Q |
217 |
acgatgaaactggatgtggtctggaagatgagagtgagagtaacgagtccaaccaagttcagtgagtcgttgctcaagttgagagaaggaatgaatgact |
316 |
Q |
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| T |
41468122 |
acgatgaaactggatgtggtctggaagatgagagtgagagtaacgagtccaaccaagttcagtgagtcgttgctcaagttgagagaaggaatgaatgact |
41468221 |
T |
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| Q |
317 |
tggtttgttggaagatatacaagaattcttggtcttgcacctggtgctgttgctgttcctgttcctggttctgtcttgtgctcaaaggattctcttgttg |
416 |
Q |
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| T |
41468222 |
tggtttgttggaagatatacaagaactcttggtcttgcacctggtgctgttgctgttcctgttcctggttctgtcttgtgctcgaaggattctcttgttg |
41468321 |
T |
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| Q |
417 |
ggttggttattaacctcaccacacctttcttgtcaaatacccatacacctgacattacttgctttcctttgtttcactg-tttcacttttcactatctcc |
515 |
Q |
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| T |
41468322 |
ggttggttattaacctcaccacacctttcttgtcaaatacccatacacctgacattacttgctttcctttgtttcactgttttcacttttcactatctcc |
41468421 |
T |
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| Q |
516 |
agtgtatctatcacttatatgtatgtgttgagttaagaaaattgaacacttgatgaaagagaatcatagagtttattcatgcaactacttat |
607 |
Q |
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| T |
41468422 |
agtgtatctatcacttatatgtatgtgttgagttaagaaaattgaacccttgatgaaagagaatcatagagtttattcatgcaactacttat |
41468513 |
T |
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