View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_high_23 (Length: 353)
Name: NF14315_high_23
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 6232437 - 6232764
Alignment:
| Q |
14 |
gaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcgga |
113 |
Q |
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| T |
6232437 |
gaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcgga |
6232536 |
T |
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| Q |
114 |
gataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcg |
213 |
Q |
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| T |
6232537 |
gataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctaaaaaatcttttccttcttgtgataattcc |
6232636 |
T |
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| Q |
214 |
tctggaatctttggcaattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccat---gcgggttctccggtaatcatctcca |
310 |
Q |
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| T |
6232637 |
tctggaatttttggcaattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccatgcggcgggttctccggtaatcatctcca |
6232736 |
T |
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| Q |
311 |
cgacggcgcaaccaagagcccatatatc |
338 |
Q |
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| T |
6232737 |
cgacggcgcaaccaagagcccatatatc |
6232764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 6221699 - 6221863
Alignment:
| Q |
58 |
gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca |
157 |
Q |
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| T |
6221699 |
gacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatctttttg |
6221798 |
T |
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| Q |
158 |
aaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatc |
222 |
Q |
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| T |
6221799 |
aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatc |
6221863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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