View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_high_29 (Length: 301)
Name: NF14315_high_29
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 3772950 - 3773219
Alignment:
| Q |
18 |
agatgatgatgagttttgtgaggtcggaggctacgacagcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctggg |
117 |
Q |
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| T |
3772950 |
agataatgatgagttttgtgaggtcggaggctacgacagcgtaaacgttatgcaaaggcaaagacgtggttctgcgacatcttacaccaacgtttctgga |
3773049 |
T |
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| Q |
118 |
tttcttgattgaattctcctcctcgccgcgtttttgggttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattgg--aaaaaccatcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
3773050 |
tttcttgattgaattctcctcctcgccgcgtttttgggttgatttttttgtttttaatgaatatatgcattttctatttttactggaaaaaaaacatcac |
3773149 |
T |
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| Q |
216 |
agttaaaaaataatcgaattaaaaattcaannnnnnnccttctttacctcactgtttgttagattgaaaa |
285 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
3773150 |
agttaaaaaataatcgaattaaaaattcaatttttttccttcttttcctcactgtttgttagattgaaaa |
3773219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 44943805 - 44943581
Alignment:
| Q |
16 |
acagatgatgatgagttttgtgaggtcggaggctacgacagcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctg |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||| |
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| T |
44943805 |
acagatgatgatgggttttgtgaggtcggaggctacgacaacgtaaacgttatgcaaaggcgaagacgtggttctt----acgttatgc-aacgtttctg |
44943711 |
T |
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| Q |
116 |
ggtttcttgattgaattctcctcctcgccgcgtttttgggttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaaccatcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44943710 |
ggtttcttgattgaattctcctcctcgccgcgtttttgggttgatttttttgtttttaatgaatatatgcattttctacttttattggaaaaaccatcac |
44943611 |
T |
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| Q |
216 |
agttaaaaaataatcgaattaaaaattcaa |
245 |
Q |
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| T |
44943610 |
agttaaaaaataatcgaattaaaaattcaa |
44943581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 22966916 - 22966692
Alignment:
| Q |
16 |
acagatgatgatgagttttgtgaggtcggaggctacgacagcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctg |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
22966916 |
acagatgatgatgggttttgtgaggtcggaggctacgacaacgtaaacgttatgcaaaggcgaagacgtggttct----tacgtta-tgcaacgtttctg |
22966822 |
T |
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| Q |
116 |
ggtttcttgattgaattctcctcctcgccgcgtttttgggttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaaccatcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
22966821 |
ggtttcttgattgaattctcctcctcgccgcgtttttgggttgatttttttgtttttaatgaatatatgcattttctacttttattagaaaaaccatcac |
22966722 |
T |
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| Q |
216 |
agttaaaaaataatcgaattaaaaattcaa |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22966721 |
agttaaaaaataatcgaattaaaaattcaa |
22966692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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