View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_high_30 (Length: 295)

Name: NF14315_high_30
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_high_30
NF14315_high_30
[»] chr2 (1 HSPs)
chr2 (1-295)||(35025417-35025711)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 35025711 - 35025417
Alignment:
Q  1 acaaggaatattattatagaattaagggccaccttttctcaccaattagcatatataatagttcttgacaattaattatatcgccttgcctgattagtgg 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025711 acaaggaatattattatagaattaatggccaccttttctcaccaattagcatatataatagttcttgacaattaattatatcgccttgcctgattagtgg 35025612  T
Q  101 agattattgtataattgttttttcttttggtgagaaagcaacaaactgatcgatacaagacgattaaagaagtcttactgatcaaattttataatcaatt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025611 agattattgtataattgttttctcttttggtgagaaagcaacaaactgatcgatacaagacgattaaagaagtcttactgatcaaattttataatcaatt 35025512  T
Q  201 aatcgtaggttcaagattttctagtttattttatgtctatagattaatagtgtttgtcagcatcattttaggtatgtagcatttttagagtggtt 295  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35025511 aatcgtaggttcaagattttctagtttattttatgtctattgattaatagtgtttgtcagcatcattttaggtatgtaccatttttagagtggtt 35025417  T

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