View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_high_6 (Length: 539)
Name: NF14315_high_6
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 521
Target Start/End: Complemental strand, 1582379 - 1581872
Alignment:
| Q |
10 |
cacagataataatatgagaaaatcacataatctaatgcaatggcacgtgacggtgacacatgttagagtactttgtaaactaaattgactgatttcatat |
109 |
Q |
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| T |
1582379 |
cacagataataatatgagaaaatcacataatctaatgcaatggcacgtgacagtgacacatgttagagtactttgtaaactaaattgactgatttcatat |
1582280 |
T |
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| Q |
110 |
attttaaggactgtttataacagtttatggactaaattgatggtttattctcaaatttacatnnnnnnn-ttactagattgttatatgcaaacaatattg |
208 |
Q |
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| T |
1582279 |
attttaaggactgtttataacagtttatggactaaattgatggtttattctcaaatttacataaaaaaaattactagattgttatatgcaaacaatattg |
1582180 |
T |
|
| Q |
209 |
atttaaatcaaacagcatgatagtactgcaacgatggacgaaaatcatacagaagatagaaataacataattcactaatcttgtagcaaattaagcaagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582179 |
atttaaatcaaacagcatgatagtactgcaacgatggacgaaaatcatacagaagatagaaataacataattcactaatcttgtagcaaattaagcaagt |
1582080 |
T |
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| Q |
309 |
attataatactaaaacaattttaattcagnnnnnnnnnnnnnggaaagaatcatacattagtcagatctacaccgttaattgagaaattggatttttcat |
408 |
Q |
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| T |
1582079 |
attataatactaaaacaattttaattca-----aaaaaaaaaggaaagaatcatacattagtcagatctacaccgttaattgagaaattggatttttcat |
1581985 |
T |
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| Q |
409 |
ctccagaatgagaagcttcacttatctgcttcaccgtaaccggaatcaaaccctgagaatcgcgactcttgaacaaagaacnnnnnnnnntattagttaa |
508 |
Q |
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| T |
1581984 |
ctccagaatgagaagcttcacttatctgcttcaccgtaaccggaatcaaaccctgagaatcgcgactcttgaacaaagaacaaaaaaaaatattagataa |
1581885 |
T |
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| Q |
509 |
tcgataatcttta |
521 |
Q |
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||||||||||||| |
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| T |
1581884 |
tcgataatcttta |
1581872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 31811225 - 31811197
Alignment:
| Q |
131 |
agtttatggactaaattgatggtttattc |
159 |
Q |
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| T |
31811225 |
agtttatggactaaattgatggtttattc |
31811197 |
T |
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