View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_10 (Length: 468)

Name: NF14315_low_10
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_10
NF14315_low_10
[»] chr1 (8 HSPs)
chr1 (37-434)||(24633806-24634190)
chr1 (167-236)||(16083440-16083509)
chr1 (161-217)||(13962650-13962706)
chr1 (256-304)||(13966273-13966321)
chr1 (180-236)||(25018444-25018500)
chr1 (255-334)||(33379509-33379579)
chr1 (159-301)||(44787530-44787671)
chr1 (266-334)||(13962747-13962815)
[»] chr8 (9 HSPs)
chr8 (159-334)||(22450217-22450391)
chr8 (256-334)||(22455263-22455340)
chr8 (259-334)||(28291728-28291803)
chr8 (162-218)||(41652268-41652324)
chr8 (256-334)||(32352049-32352126)
chr8 (256-334)||(32368710-32368787)
chr8 (159-236)||(19709737-19709814)
chr8 (257-299)||(5892460-5892502)
chr8 (245-282)||(11647521-11647558)
[»] chr2 (3 HSPs)
chr2 (105-334)||(17162157-17162384)
chr2 (159-281)||(20515755-20515876)
chr2 (176-236)||(23388922-23388982)
[»] chr3 (15 HSPs)
chr3 (159-326)||(25466252-25466417)
chr3 (345-434)||(28701975-28702064)
chr3 (159-334)||(53589271-53589446)
chr3 (253-334)||(1744951-1745031)
chr3 (345-390)||(3541933-3541978)
chr3 (253-304)||(25321066-25321117)
chr3 (256-334)||(4022888-4022966)
chr3 (247-321)||(17439315-17439389)
chr3 (148-217)||(4026648-4026717)
chr3 (147-220)||(44451146-44451219)
chr3 (256-312)||(44451056-44451112)
chr3 (161-236)||(25320968-25321043)
chr3 (257-299)||(14132280-14132322)
chr3 (255-301)||(15987444-15987490)
chr3 (266-334)||(4026540-4026608)
[»] chr5 (9 HSPs)
chr5 (109-334)||(10235774-10235996)
chr5 (101-212)||(24308768-24308879)
chr5 (101-212)||(24364446-24364557)
chr5 (159-220)||(20646250-20646311)
chr5 (345-396)||(39421028-39421079)
chr5 (256-300)||(9422977-9423021)
chr5 (159-291)||(28619443-28619574)
chr5 (247-301)||(22987592-22987646)
chr5 (167-220)||(9422890-9422943)
[»] chr7 (8 HSPs)
chr7 (105-220)||(7948258-7948373)
chr7 (256-312)||(11994107-11994163)
chr7 (167-278)||(12468705-12468816)
chr7 (345-396)||(19815114-19815165)
chr7 (345-412)||(33477441-33477507)
chr7 (342-391)||(31670354-31670403)
chr7 (246-334)||(28037027-28037106)
chr7 (147-220)||(11994197-11994270)
[»] chr4 (3 HSPs)
chr4 (259-323)||(24924739-24924803)
chr4 (342-423)||(32090726-32090804)
chr4 (339-391)||(21219314-21219366)
[»] chr6 (9 HSPs)
chr6 (159-300)||(28712153-28712292)
chr6 (158-217)||(10163524-10163583)
chr6 (183-230)||(18713519-18713566)
chr6 (260-312)||(23073092-23073144)
chr6 (256-300)||(34992227-34992271)
chr6 (257-334)||(6038838-6038915)
chr6 (159-235)||(14767091-14767168)
chr6 (361-394)||(16692984-16693017)
chr6 (180-293)||(24154355-24154467)
[»] scaffold0003 (1 HSPs)
scaffold0003 (159-199)||(89542-89582)
[»] scaffold0167 (1 HSPs)
scaffold0167 (156-236)||(758-838)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 37 - 434
Target Start/End: Complemental strand, 24634190 - 24633806
Alignment:
Q  37 atggctgggatcaacatatattaaaacgaaattgttggatcaacaagtatgtgctgaatctacggttacttccaaaaattacacaaatagtgtcccacta 136  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       
T  24634190 atggctgggatcagcatatgttaaaacgaaattgttggatcaacaagtatgtgctgaatctacggttacttccaaaaattacataaatagtgtccca--- 24634094  T
Q  137 ggtgtcccaatttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
             ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  24634093 ---------atttgtttaccgatgtttttcgtaaacaataagactagttttgattattacaagcaggatcacaccataaatcctttgacatgttatgcaa 24634003  T
Q  237 nnnnnnnnctagaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtctttag 336  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  24634002 ttttttt-ctagaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtctatgaaaataattgtctttaa 24633904  T
Q  337 accatggacggatccaccataaggcatggtgtggtagctgccacaccagattattgcccaataatttatttcttttaatatagtagactaaaaaacta 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  24633903 accatggacggatccaccataaggcatggtgtggtagctgccacaccagattattgcccaataatttatttcttttaatatagtagaccgaaaaacta 24633806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 16083440 - 16083509
Alignment:
Q  167 gtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
    ||||| || ||||||||||||||||||||||| || ||||| |||| ||| |||  ||||||||||||||    
T  16083440 gtaaacaacaagactagttttgattattacaaacaggatcaaaccagaaaccctaggacatgttatgcaa 16083509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 13962650 - 13962706
Alignment:
Q  161 tttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaat 217  Q
    ||||| ||||| ||||  |||||||| |||||||||||||||||||| |||||||||    
T  13962650 ttttttgtaaacaatagaactagtttggattattacaagcaagatcaaaccataaat 13962706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 13966273 - 13966321
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaa 304  Q
    ||||||||||||||||||||||||||  || ||||| ||||||||||||    
T  13966273 atgaatgttcatcatattcataggttgttttatgaacaagatgaagaaa 13966321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 25018444 - 25018500
Alignment:
Q  180 ctagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
    |||||||||||||||||||||| ||||| |||| |||||||  |||||||| |||||    
T  25018444 ctagttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgcaa 25018500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 33379579 - 33379509
Alignment:
Q  255 tatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    |||||||||||||||||| |||||||| ||| ||||| |||||||||         ||||||||||||||||||||||||    
T  33379579 tatgaatgttcatcatatccataggttgctttatgaacaagatgaag---------ttgtgtatgaaaataattgtcttt 33379509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 301
Target Start/End: Complemental strand, 44787671 - 44787530
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    |||||||  |||| || |||||||||||||||||||||||  | ||||| |||||||||| |  |||||||| |||||        | |||||   ||||    
T  44787671 tgtttttgataaacaacaagactagttttgattattacaactaggatcaaaccataaatcatatgacatgttgtgcaatcttttttcaagaaa-gatatg 44787573  T
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaag 301  Q
    ||||||||||||||||||| ||| ||| |||||  ||||||||    
T  44787572 aatgttcatcatattcataagttgctttatgaaagagatgaag 44787530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 13962747 - 13962815
Alignment:
Q  266 atcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||||||||||||||||  || ||||| ||||||||||||   ||||| |||||||| |||||| |||||    
T  13962747 atcatattcataggttgttttatgaacaagatgaagaaaaccgttttttgtatgaagataattctcttt 13962815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 22450391 - 22450217
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    ||||||| ||||| || | |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||        | | ||||||||||    
T  22450391 tgtttttggtaaacaaaaggactagttttgattattacaagcaagatcaaaccataaatcctgtgacatgttatgcaatctttttcc-aaaaattgtatg 22450293  T
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||| |||||||||||||||||||  || ||||| ||||||||||||  | |||| | ||||||||||| |||||||    
T  22450292 aatcttcatcatattcataggttgttttatgaacaagatgaagaaaactattttttatatgaaaataactgtcttt 22450217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 22455340 - 22455263
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||   ||||| ||||||||||||| |||||||    
T  22455340 atgaatgttcatcatattcataggttgctttatgaataagatgaagaaaaccgtttt-tgtatgaaaataactgtcttt 22455263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 28291803 - 28291728
Alignment:
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||||  |||||||||||| |||| | ||||||||    
T  28291803 aatgttcatcatattcataggttactttatgaacaagatgaagaaaattgttttgtgtattaaaaaagttgtcttt 28291728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 41652324 - 41652268
Alignment:
Q  162 ttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatc 218  Q
    |||||||||| || |||||||||||||||||||||||||| ||||| |||| |||||    
T  41652324 ttttcgtaaacaacaagactagttttgattattacaagcaggatcaaaccagaaatc 41652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 32352049 - 32352126
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    |||||||||| |||||||||||||||  || ||||| ||||||||| ||  |||||| |||||||| ||||||||||||    
T  32352049 atgaatgttcgtcatattcataggttaatttatgaacaagatgaaggaaactgtttt-tgtatgaagataattgtcttt 32352126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 32368710 - 32368787
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    |||||||||| |||||||||||||||  || ||||| ||||||||| ||  |||||| |||||||| ||||||||||||    
T  32368710 atgaatgttcgtcatattcataggttaatttatgaacaagatgaaggaaactgtttt-tgtatgaagataattgtcttt 32368787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 19709814 - 19709737
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
    ||||||| ||||| || ||| ||| ||||||||||| |||||| ||||| ||||||||||||  |||||||| |||||    
T  19709814 tgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaa 19709737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 5892460 - 5892502
Alignment:
Q  257 tgaatgttcatcatattcataggtttcttgatgaataagatga 299  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||    
T  5892460 tgaatgttcatcatattcataggttactttatgaacaagatga 5892502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 11647558 - 11647521
Alignment:
Q  245 ctagaaattgtatgaatgttcatcatattcataggttt 282  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  11647558 ctagaaaatgtatgaatgttcatcatattcataagttt 11647521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 105 - 334
Target Start/End: Complemental strand, 17162384 - 17162157
Alignment:
Q  105 cttccaaaaattacacaaatagtgtcccactaggtgtcccaatttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaaga 204  Q
    |||||| ||||| ||||||||| |||||||   | || |||||||||||| || ||||||| ||||| ||||  | | ||||||||||||||||||| ||    
T  17162384 cttccataaattgcacaaatagggtcccaccgagagtgccaatttgtttaccagtgtttttggtaaacaatagaattggttttgattattacaagcagga 17162285  T
Q  205 tcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaa 304  Q
    ||| |||| |||||||  |||||||| |||||        | | ||| |  |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  17162284 tcaaaccagaaatcctatgacatgttgtgcaatctttttcc-ataaaatacatgaatgttcatcatattcataggttgctttatgaataagatgaagaaa 17162186  T
Q  305 catgttttgtgtatgaaaataattgtcttt 334  Q
      |||||| |||||||| ||||||| ||||    
T  17162185 actgtttt-tgtatgaagataattgccttt 17162157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 20515876 - 20515755
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| |  |||||||| || ||        | ||||| ||||||    
T  20515876 tgtttttggtaaacaataagactagttttgattattacaagcaggatcaaaccagaaatcttaggacatgttgtgtaatctttttcc-agaaagtgtatg 20515778  T
Q  259 aatgttcatcatattcataggtt 281  Q
    |||||||||||||||||||||||    
T  20515777 aatgttcatcatattcataggtt 20515755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 23388922 - 23388982
Alignment:
Q  176 aagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||  |||||||| |||||    
T  23388922 aagactagttttgattattacaagcatgatcaaaccagaaatcctaggacatgttgtgcaa 23388982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 326
Target Start/End: Original strand, 25466252 - 25466417
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    ||||||| |||||||||| |||||||||||||||||||||||| ||||| ||   |||||||  |||||||| |||||        ||||||| | ||||    
T  25466252 tgtttttggtaaataatatgactagttttgattattacaagcaggatcaaactgaaaatcctaggacatgttttgcaa-tcttttcctagaaaatatatg 25466350  T
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataa 326  Q
    |||||||||||||||||||||||  || | ||| ||||||||||||  |||||| |||||||||||||    
T  25466351 aatgttcatcatattcataggttgttttacgaacaagatgaagaaaactgtttt-tgtatgaaaataa 25466417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 434
Target Start/End: Original strand, 28701975 - 28702064
Alignment:
Q  345 cggatccaccataaggcatggtgtggtagctgccacaccagattattgcccaataatttatttcttttaatatagtagactaaaaaacta 434  Q
    ||||||||||||||| |||| ||||| ||||| ||||||||||||||| |||||||| ||||| ||||||||||  ||||| ||||||||    
T  28701975 cggatccaccataagacatgatgtggcagctgtcacaccagattattgtccaataatatattttttttaatatatgagactgaaaaacta 28702064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 53589446 - 53589271
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    ||||||| |||||||||| |||||||||||||||||||||| | ||||| |||| |||||||  ||||| || |||||          ||||| |  |||    
T  53589446 tgtttttggtaaataataggactagttttgattattacaagtaggatcaaaccagaaatcctaggacattttgtgcaatctttttttcagaaaatacatg 53589347  T
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||||||||||||||||||| ||| ||| ||||| |||||||| |||    |||| |||||||| ||||||| ||||    
T  53589346 aatgttcatcatattcatatgttgctttatgaacaagatgaataaaaccattttttgtatgaagataattgccttt 53589271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 1744951 - 1745031
Alignment:
Q  253 tgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||||||||||||||||||||| ||||||| ||| || || ||||||||||||  |||||| |||||||| ||||||||||||    
T  1744951 tgtatgaatgttcatcatatttataggttgctttataaacaagatgaagaaaactgtttt-tgtatgaagataattgtcttt 1745031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 3541978 - 3541933
Alignment:
Q  345 cggatccaccataaggcatggtgtggtagctgccacaccagattat 390  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  3541978 cggatccaccataaggcatggtgtggtagctgtcacaccagattat 3541933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 25321066 - 25321117
Alignment:
Q  253 tgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaa 304  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  25321066 tgtatgaatgttcatcatattcataggttgctttatgaacaagatgaagaaa 25321117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 4022966 - 4022888
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||||||||||||||||||||||||||  || ||||| ||||||||||||   ||||| |||||||| |||| |||||||    
T  4022966 atgaatgttcatcatattcataggttgttttatgaacaagatgaagaaaaccgttttttgtatgaagataagtgtcttt 4022888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 17439389 - 17439315
Alignment:
Q  247 agaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaa 321  Q
    |||||||||||||||||||||||||||||||||||   | ||||| |||| |||||||  |||||| ||||||||    
T  17439389 agaaattgtatgaatgttcatcatattcataggttggattatgaacaagaagaagaaaattgttttttgtatgaa 17439315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 4026717 - 4026648
Alignment:
Q  148 ttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaat 217  Q
    |||||||||  ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||| ||||    
T  4026717 ttgtttatcggtgttttttgtaaacaataaaactagttttgattattataagcaagatcaaaccagaaat 4026648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 44451219 - 44451146
Alignment:
Q  147 tttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatcct 220  Q
    ||||||||||  ||||||| ||||| || | |||||||||||||||||||||||||||||| | || |||||||    
T  44451219 tttgtttatcggtgtttttggtaaacaacatgactagttttgattattacaagcaagatcaaatcagaaatcct 44451146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 44451112 - 44451056
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgtttt 312  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||| ||| |||||||    
T  44451112 atgaatgttcatcatattcataggttgctttatgaacaagatgaataaaaatgtttt 44451056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 25320968 - 25321043
Alignment:
Q  161 tttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
    ||||| ||||| |||| |||||||||||||||||||||||| | ||| |||| ||||| |  |||||||| |||||    
T  25320968 tttttggtaaacaatatgactagttttgattattacaagcatggtcaaaccaaaaatcgtaggacatgttgtgcaa 25321043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 14132322 - 14132280
Alignment:
Q  257 tgaatgttcatcatattcataggtttcttgatgaataagatga 299  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||    
T  14132322 tgaatgttcatcaaattcataggtttctttatgaacaagatga 14132280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 15987444 - 15987490
Alignment:
Q  255 tatgaatgttcatcatattcataggtttcttgatgaataagatgaag 301  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||||||    
T  15987444 tatgaatgttcatcattttcataggttgctttatgaacaagatgaag 15987490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 4026608 - 4026540
Alignment:
Q  266 atcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    ||||||||||||||||  || ||||| |||| |||||||  |||||| |||||||| |||||| |||||    
T  4026608 atcatattcataggttgttttatgaacaagaagaagaaaactgttttttgtatgaagataattctcttt 4026540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 109 - 334
Target Start/End: Original strand, 10235774 - 10235996
Alignment:
Q  109 caaaaattacacaaatagtgtcccactaggtgtcccaatttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaagatcac 208  Q
    |||||||| |||||| |  ||||||||| | || ||||||||||||  | ||||||| ||||| ||||||||||||||||||||||||||||| |||||     
T  10235774 caaaaattgcacaaacatggtcccactaagcgtgccaatttgtttactagtgtttttggtaaacaataagactagttttgattattacaagcatgatcaa 10235873  T
Q  209 accataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatg 308  Q
    |||| |||| ||  |||||||| |||||        | | ||| |  ||||||||||||||| ||||||| || ||| ||||| ||||| || |||  ||    
T  10235874 accagaaattctaggacatgttgtgcaatctttttcc-aaaaaatacatgaatgttcatcat-ttcatagtttgctttatgaacaagatcaataaaattg 10235971  T
Q  309 ttttgtgtatgaaaataattgtcttt 334  Q
    |||| |||||||||||||||||||||    
T  10235972 tttt-tgtatgaaaataattgtcttt 10235996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 24308768 - 24308879
Alignment:
Q  101 gttacttccaaaaattacacaaatagtgtcccactaggtgtcccaatttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagc 200  Q
    |||||||||||||||| |||||| || || ||||| |  || |||||||||||| |  | ||||| ||||| || || ||||||||||||||||||||||    
T  24308768 gttacttccaaaaattgcacaaacagggttccactggacgtgccaatttgtttaccggtatttttggtaaacaagaaaactagttttgattattacaagc 24308867  T
Q  201 aagatcacacca 212  Q
    | ||||| ||||    
T  24308868 aggatcaaacca 24308879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 24364557 - 24364446
Alignment:
Q  101 gttacttccaaaaattacacaaatagtgtcccactaggtgtcccaatttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagc 200  Q
    |||||||||||||||| |||||| || || ||||| |  || |||||||||||| |  | ||||| ||||| || || ||||||||||||||||||||||    
T  24364557 gttacttccaaaaattgcacaaacagggttccactggacgtgccaatttgtttaccggtatttttggtaaacaagaaaactagttttgattattacaagc 24364458  T
Q  201 aagatcacacca 212  Q
    | ||||| ||||    
T  24364457 aggatcaaacca 24364446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 20646250 - 20646311
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatcct 220  Q
    ||||||| ||||| ||||  ||||||||||||||||||||||||||||  ||||||||||||    
T  20646250 tgtttttggtaaacaatagaactagttttgattattacaagcaagatcgaaccataaatcct 20646311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 39421028 - 39421079
Alignment:
Q  345 cggatccaccataaggcatggtgtggtagctgccacaccagattattgccca 396  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  39421028 cggatccaccataaggcatggtgtggcaattgccacaccagattattcccca 39421079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 9422977 - 9423021
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaa 300  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||    
T  9422977 atgaatgttcatcatattcataggttactttatgaacaagatgaa 9423021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 28619574 - 28619443
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    ||||||| || || || |||||||||||| ||||||||||||| ||||| |||| ||||| |  |||||||| |||||        | ||||| ||| ||    
T  28619574 tgtttttggtgaacaagaagactagttttaattattacaagcaggatcaaaccagaaatcataggacatgttgtgcaatccttttcc-agaaaatgtgtg 28619476  T
Q  259 aatgttcatcatattcataggtttcttgatgaa 291  Q
    ||||||||||||||||||| ||| ||| |||||    
T  28619475 aatgttcatcatattcataagttgctttatgaa 28619443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 22987592 - 22987646
Alignment:
Q  247 agaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaag 301  Q
    ||||| ||| ||||||||||||||||||||||||| ||| || || |||||||||    
T  22987592 agaaagtgtgtgaatgttcatcatattcataggttgctttataaacaagatgaag 22987646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 9422890 - 9422943
Alignment:
Q  167 gtaaataataagactagttttgattattacaagcaagatcacaccataaatcct 220  Q
    |||||||| | |||||||||||||||||||||||| ||||| | || |||||||    
T  9422890 gtaaataacatgactagttttgattattacaagcaggatcaaatcagaaatcct 9422943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 7948373 - 7948258
Alignment:
Q  105 cttccaaaaattacacaaatagtgtcccactaggtgtcccaatttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaaga 204  Q
    |||||||| ||| |||||| || || ||| ||||||| |||||||||||| |  | ||||| ||||| |||| ||||||| ||||||||||||| || ||    
T  7948373 cttccaaatattgcacaaacagggtaccattaggtgtgccaatttgtttagcggtatttttggtaaacaataggactagtcttgattattacaaacagga 7948274  T
Q  205 tcacaccataaatcct 220  Q
    ||| ||||||||||||    
T  7948273 tcaaaccataaatcct 7948258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 11994163 - 11994107
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgtttt 312  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||| ||| |||||||    
T  11994163 atgaatgttcatcatattcataggttgctttatgaacaagatgaataaaaatgtttt 11994107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 12468705 - 12468816
Alignment:
Q  167 gtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatgaatgttca 266  Q
    ||||| |||| |||||||||||||||||||||||| | |||  ||| |||||||  ||||||||||||||        | | ||| | ||||||||||||    
T  12468705 gtaaacaatatgactagttttgattattacaagcatggtcaatccagaaatcctaggacatgttatgcaatcttttttccataaaatatatgaatgttca 12468804  T
Q  267 tcatattcatag 278  Q
    ||||||||||||    
T  12468805 tcatattcatag 12468816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 19815114 - 19815165
Alignment:
Q  345 cggatccaccataaggcatggtgtggtagctgccacaccagattattgccca 396  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  19815114 cggatccaccataaggcatggtgtggcacttgccacaccagattattcccca 19815165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 33477441 - 33477507
Alignment:
Q  345 cggatccaccataaggcatggtgtggtagctgccacaccagattattgcccaataatttatttctttt 412  Q
    ||||||||||| |||||||||||||| | || |||||||||| |||||||||||||||| ||| ||||    
T  33477441 cggatccacca-aaggcatggtgtggcaactcccacaccagaatattgcccaataatttgtttttttt 33477507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 31670354 - 31670403
Alignment:
Q  342 ggacggatccaccataaggcatggtgtggtagctgccacaccagattatt 391  Q
    |||||||||| ||||||| ||||||||||| | |||||||||||||||||    
T  31670354 ggacggatccgccataagacatggtgtggttgttgccacaccagattatt 31670403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 28037027 - 28037106
Alignment:
Q  246 tagaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    |||||| ||||||||||||||||||||||||||||| ||| || || ||||| |||         ||||||||||||||||||||||||    
T  28037027 tagaaagtgtatgaatgttcatcatattcataggttgctttataaacaagataaag---------ttgtgtatgaaaataattgtcttt 28037106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 11994270 - 11994197
Alignment:
Q  147 tttgtttatcaatgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatcct 220  Q
    ||||||||||  ||||||| ||||| || | |||||||||| ||||||||||||| ||||| | || |||||||    
T  11994270 tttgtttatcggtgtttttggtaaacaacatgactagtttttattattacaagcaggatcaaatcagaaatcct 11994197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 24924739 - 24924803
Alignment:
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaa 323  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  24924739 aatgttcatcatattcacaggttgctttatgaacaagatgaagaaaattgttttgtgtatgaaaa 24924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 32090804 - 32090726
Alignment:
Q  342 ggacggatccaccataaggcatggtgtggtagctgccacaccagattattgcccaataatttatttcttttaatatagtaga 423  Q
    |||||||| |||||||||| || ||||||  | ||||||||||||||||||| |||||   | ||| |||||||||||||||    
T  32090804 ggacggattcaccataaggtatagtgtggcggttgccacaccagattattgcacaata---tttttgttttaatatagtaga 32090726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 21219314 - 21219366
Alignment:
Q  339 catggacggatccaccataaggcatggtgtggtagctgccacaccagattatt 391  Q
    ||||| |||||||| ||| ||||||||||||  ||||| ||||||||||||||    
T  21219314 catgggcggatccatcattaggcatggtgtgacagctgtcacaccagattatt 21219366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 300
Target Start/End: Original strand, 28712153 - 28712292
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatg 258  Q
    ||||||| ||||| ||  |||||||||| |||||||||| ||||||||| |||| |||||||  |||||||| |||||        | | ||| ||||||    
T  28712153 tgtttttggtaaacaacgagactagttt-gattattacaggcaagatcaaaccagaaatcctaggacatgttgtgcaatctttttcc-ataaagtgtatg 28712250  T
Q  259 aatgttcatcatattcataggtttcttgatgaataagatgaa 300  Q
    ||||||||| ||||||||||||| ||| ||||| ||||||||    
T  28712251 aatgttcataatattcataggttgctttatgaacaagatgaa 28712292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 10163583 - 10163524
Alignment:
Q  158 atgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaat 217  Q
    |||||||| ||||| || |||||||||||||||||||||||||| ||||| |||| ||||    
T  10163583 atgtttttggtaaaaaagaagactagttttgattattacaagcaggatcaaaccagaaat 10163524  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 18713519 - 18713566
Alignment:
Q  183 gttttgattattacaagcaagatcacaccataaatccttcgacatgtt 230  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  18713519 gttttgattattacaagcaagatcaaaccagaaatccttggacatgtt 18713566  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 23073144 - 23073092
Alignment:
Q  260 atgttcatcatattcataggtttcttgatgaataagatgaagaaacatgtttt 312  Q
    ||||||||||||||||||| ||| || || ||||||||||||||| |||||||    
T  23073144 atgttcatcatattcatagtttttttaataaataagatgaagaaaaatgtttt 23073092  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 34992227 - 34992271
Alignment:
Q  256 atgaatgttcatcatattcataggtttcttgatgaataagatgaa 300  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||    
T  34992227 atgaatgttcatcatattcataggttgctttatgaacaagatgaa 34992271  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 6038838 - 6038915
Alignment:
Q  257 tgaatgttcatcatattcataggtttcttgatgaataagatgaagaaacatgttttgtgtatgaaaataattgtcttt 334  Q
    |||||||||||||||||||||| || ||| ||||| |||||||| |||  |||||| || || || ||||| ||||||    
T  6038838 tgaatgttcatcatattcatagtttgctttatgaacaagatgaataaaactgttttttgaataaagataatcgtcttt 6038915  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 14767168 - 14767091
Alignment:
Q  159 tgtttttcgtaaataataaga-ctagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgca 235  Q
    ||||||| ||||| ||||||  |||||||||||||||||||||| ||||| |||| |||| ||  |||||||| ||||    
T  14767168 tgtttttggtaaacaataagggctagttttgattattacaagcacgatcaaaccagaaattctaggacatgttgtgca 14767091  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 394
Target Start/End: Original strand, 16692984 - 16693017
Alignment:
Q  361 catggtgtggtagctgccacaccagattattgcc 394  Q
    |||||||||||||||||||||||||||| |||||    
T  16692984 catggtgtggtagctgccacaccagattcttgcc 16693017  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 24154467 - 24154355
Alignment:
Q  180 ctagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaannnnnnnnctagaaattgtatgaatgttcatcatattcatagg 279  Q
    |||||||||||||||||||| | ||||| ||||||||||||  ||| |||| |||||        | ||||| |  |||| |||||||||||||||||||    
T  24154467 ctagttttgattattacaagtaggatcaaaccataaatcctaggacttgttgtgcaatctttttcc-agaaaattcatgagtgttcatcatattcatagg 24154369  T
Q  280 tttcttgatgaata 293  Q
    || ||| |||||||    
T  24154368 ttgctttatgaata 24154355  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 89542 - 89582
Alignment:
Q  159 tgtttttcgtaaataataagactagttttgattattacaag 199  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  89542 tgtttttagtaaacaataagactagttttgattattacaag 89582  T

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Target: scaffold0167 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 838 - 758
Alignment:
Q  156 caatgtttttcgtaaataataagactagttttgattattacaagcaagatcacaccataaatccttcgacatgttatgcaa 236  Q
    |||||||||| |||||  | ||| |||| ||||||||||||||||||| ||| || | |||||||  |||||||| |||||    
T  838 caatgtttttggtaaactacaagtctagctttgattattacaagcaagttcaaactagaaatcctaggacatgttgtgcaa 758  T

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