View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_12 (Length: 454)
Name: NF14315_low_12
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 224 - 444
Target Start/End: Complemental strand, 46313330 - 46313110
Alignment:
| Q |
224 |
ggagaaacctgaggaattatgtgacacacacgttaattatcagaaaatctacgactagtgttcttcttctcttcggttacattaaacagaaaagggggtg |
323 |
Q |
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| T |
46313330 |
ggagaaacctgaggaattatgtgacacacacgttaattatcagaaaatctacgactagtgttcttcttctcttcggttacattaaacagaaaaaggggtg |
46313231 |
T |
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| Q |
324 |
tgaaccttgttctttgtttcctgaaacagacatgtatgtatgtatgtcagagtgagagttaagagttgttgaatttaataataaagtactgacatttagt |
423 |
Q |
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| T |
46313230 |
tgaaccttgttctttgtttcctgaaacagacatgtatgtatgtatgtcagagtgagagttaagagttgttgaatttaataataaagtactgacatttagt |
46313131 |
T |
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| Q |
424 |
ttagccgatacgatacctttg |
444 |
Q |
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| T |
46313130 |
ttagccgatacgatacctttg |
46313110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 46313547 - 46313495
Alignment:
| Q |
19 |
aaaggtgtgggcagcgaaagcttgcgctgatttcaacaccctgctccagctca |
71 |
Q |
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| T |
46313547 |
aaaggtgtgggcagcgaaagcttgcgctgatttcaacaccctgctccagctca |
46313495 |
T |
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