View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_13 (Length: 442)
Name: NF14315_low_13
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 14167006 - 14166593
Alignment:
| Q |
14 |
agagaagaaaggaagtcatgaagaagccattaggatcttgactacaaggagcaaaacccagctgattgcgacattcaaccgctacagagagactcatggt |
113 |
Q |
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| T |
14167006 |
agagaagaaaggaagccatgaagaagccataaggatcttgactacaaggagcaaaacccagctgattgcgacattcaaccgctacagagagactcatggt |
14166907 |
T |
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| Q |
114 |
acttccatcactaaggtatataataaaaagattacgatattnnnnnnnttatgatattataactcgttatttaaatttgtgtccgtttaatctttacaga |
213 |
Q |
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| T |
14166906 |
acttccatcactaaggtatataataaaaagattacgatattaaaaaaattatgatattatgattcgttatttaaatttgtgtccgtttaatctttacaga |
14166807 |
T |
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| Q |
214 |
agctgttggatgaaggatctgatgaatttcagaaggcattgtataccaccatccgtagcttcaatgatcatgttaagtactatgaaaaggtagatctctc |
313 |
Q |
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| T |
14166806 |
agctgttggatgaaggatctgatgaatttcagaaggcattgtataccaccatccgtagcttcaatgatcatgttaagtactatgaaaaggtagatctctc |
14166707 |
T |
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| Q |
314 |
acatttttctgcgatgaatttaattttgctacattgtctaggtaaaagttgtacattgaaaacaaatcggaaccattcataaaatgttcttctagagttt |
413 |
Q |
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| T |
14166706 |
acatttttctgcgatgaatttaattttgatacattgtctaggtaaaagttgtacattgaaaacaaatcggaaccattcataaaatgttcttctagagttt |
14166607 |
T |
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| Q |
414 |
aattttgatacact |
427 |
Q |
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| T |
14166606 |
aattttgatacact |
14166593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 14173969 - 14173880
Alignment:
| Q |
14 |
agagaagaaaggaagtcatgaagaagccattaggatcttgactacaaggagcaaaacccagctgattgcgacattcaaccgctacagaga |
103 |
Q |
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|||||| ||||||| |||||||||||||||||| ||| | |||||||||||||| || ||||| | || || ||||||||||||||||| |
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| T |
14173969 |
agagaaaaaaggaaatcatgaagaagccattagaatccttactacaaggagcaagactcagcttttggcaactttcaaccgctacagaga |
14173880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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