View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_15 (Length: 413)
Name: NF14315_low_15
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 15426958 - 15427201
Alignment:
| Q |
18 |
taaattaccatatttccattgcctagaccattatatatagcatggtgaaatcaagtttcttcattactcatcaatatacttattcagataaaacttgaag |
117 |
Q |
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| T |
15426958 |
taaattaccatatttccattgcctagaccattatatatagcatggtgaaatcaagtttcttcattactcatcaatatacttattcagataaaacttgaag |
15427057 |
T |
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| Q |
118 |
tttataagctccttcattatatatttcactatgagttctaaaaacacaagcattcagaaagttctttatccaaccactaggccatcatcaccaactacct |
217 |
Q |
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| T |
15427058 |
tttataagctccttcattatatatttcactatgagttctaaaaacacaagcattcagaaagttctttatccaaccactaggccatcatcaccaactacct |
15427157 |
T |
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| Q |
218 |
ctaaatccactgggact-aacttccaaccatggatcagatcttt |
260 |
Q |
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| T |
15427158 |
ctaaatccactgggactaaacttccaaccatggatcagatcttt |
15427201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 15427267 - 15427335
Alignment:
| Q |
326 |
ttgaacccaattataacaaggtcattttctttataacatacttttattcttcatcttaattatgcacat |
394 |
Q |
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| T |
15427267 |
ttgaacccaattataacaaggtcattttctttataacatacttttattcttcatcttaattatgcacat |
15427335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 15436506 - 15436622
Alignment:
| Q |
148 |
atgagttctaaaaacacaagcattcagaaagttctttatccaaccactaggccat---catcaccaactacctctaaatccactgggact-aacttccaa |
243 |
Q |
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| T |
15436506 |
atgagttctaaacacccaagcattcagaaagttctttatccaacaacaaggccatcgactacaacaactacctctaaatcaactgggactaaacatccaa |
15436605 |
T |
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| Q |
244 |
ccatggatcagatcttt |
260 |
Q |
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| T |
15436606 |
ccatggggcagatcttt |
15436622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 15442881 - 15442940
Alignment:
| Q |
148 |
atgagttctaaaaacacaagcattcagaaagttctttatccaaccactaggccatcatca |
207 |
Q |
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| T |
15442881 |
atgagttctaaacagccaagcattcagaaagttctttacccaactactaggccatcatca |
15442940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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