View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_16 (Length: 408)
Name: NF14315_low_16
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 1249214 - 1248839
Alignment:
| Q |
19 |
cctttggtataggaccacaaagctggttgtggcttacatctaggcctacaagcttaggaaggtggccgaggtaagccggaacctgaccggttaaatggtt |
118 |
Q |
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| T |
1249214 |
cctttggtataggaccacaaagctggttgtggctcacatctaggcctacaagcttaggaaggcggccgaggtaagccggaacccgaccggttaaatggtt |
1249115 |
T |
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| Q |
119 |
gttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcggggataggaccggttaggctgttccagttaaggaggacaaagttaaggtga |
218 |
Q |
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| T |
1249114 |
gttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagttaaggtga |
1249015 |
T |
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| Q |
219 |
ggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggta |
318 |
Q |
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| T |
1249014 |
ggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggga |
1248915 |
T |
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| Q |
319 |
tcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgtggtttttgggatattctt |
394 |
Q |
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| T |
1248914 |
tcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgttgtttttgggattttctt |
1248839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 72 - 394
Target Start/End: Original strand, 12079465 - 12079787
Alignment:
| Q |
72 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
171 |
Q |
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| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
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| Q |
172 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
271 |
Q |
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| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
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| Q |
272 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
371 |
Q |
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| T |
12079665 |
taaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccatctatctcaaggaagttgacacgatgg |
12079764 |
T |
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| Q |
372 |
attgtggtttttgggatattctt |
394 |
Q |
| |
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|| || ||||||||||| ||||| |
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| T |
12079765 |
atggttgtttttgggattttctt |
12079787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 72 - 394
Target Start/End: Original strand, 12096105 - 12096427
Alignment:
| Q |
72 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
171 |
Q |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
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| Q |
172 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
271 |
Q |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| ||| |
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| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
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| Q |
272 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
371 |
Q |
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|| ||||||||||| ||||| ||||| || || |||||||| || || |||||||| || |||||||| || || ||||| |||||||||||||| | | |
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| T |
12096305 |
aaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatgg |
12096404 |
T |
|
| Q |
372 |
attgtggtttttgggatattctt |
394 |
Q |
| |
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|| || ||||||||||| ||||| |
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| T |
12096405 |
atggttgtttttgggattttctt |
12096427 |
T |
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