View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_18 (Length: 401)

Name: NF14315_low_18
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_18
NF14315_low_18
[»] chr8 (7 HSPs)
chr8 (17-398)||(26891521-26891895)
chr8 (17-151)||(30856135-30856271)
chr8 (173-218)||(25487657-25487702)
chr8 (24-116)||(45218408-45218501)
chr8 (169-207)||(14478567-14478605)
chr8 (67-120)||(41178103-41178156)
chr8 (94-151)||(14511129-14511188)
[»] chr7 (7 HSPs)
chr7 (36-121)||(30588235-30588320)
chr7 (34-124)||(30861988-30862079)
chr7 (24-125)||(29892869-29892971)
chr7 (50-119)||(47581646-47581715)
chr7 (38-123)||(19531762-19531848)
chr7 (33-118)||(41162854-41162940)
chr7 (57-122)||(39172224-39172288)
[»] scaffold0067 (1 HSPs)
scaffold0067 (23-101)||(5109-5186)
[»] chr4 (3 HSPs)
chr4 (29-133)||(21120113-21120218)
chr4 (320-358)||(13807492-13807530)
chr4 (17-46)||(49747172-49747201)
[»] chr1 (2 HSPs)
chr1 (16-132)||(41153290-41153404)
chr1 (18-121)||(40344201-40344303)
[»] chr5 (2 HSPs)
chr5 (24-123)||(14811186-14811286)
chr5 (19-85)||(32307270-32307336)
[»] chr6 (2 HSPs)
chr6 (165-207)||(26280972-26281014)
chr6 (64-121)||(32251213-32251269)
[»] chr2 (2 HSPs)
chr2 (224-252)||(12027751-12027779)
chr2 (178-218)||(13056670-13056710)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 26891521 - 26891895
Alignment:
Q  17 ataaatgtattcaatattaatttttcatatatcaagacaattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttg 116  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26891521 ataaatgtatttaatattaatttttcatataccaagataattgataatattaataaggggtatagttgacaaaagagtaatga-tgtatcaataaatttg 26891619  T
Q  117 tagatgattttgtattagg-acaaacattttcttatgaatggtatgatatgttagtgtataattattttacacatttattcaatgatgtgttaccacatc 215  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26891620 tagatgattttgtattagggacaaacattttcttataaatggtataatatgttagtgtataattattttacatatttattcaatgatgtgttaccacatc 26891719  T
Q  216 aataattaaatgaatatgaaaacacatgagttgttatagatatgaattgatatgtgaagaaatgtccatttcttttaagaaatgtaaagaatatctactc 315  Q
    ||||||| ||| ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891720 aataatt-aataaatatgaaaacacatgagttgt------tatgaattgatatgtgaagaaatgtccatttcttttaagaaatgtaaagaatatctactc 26891812  T
Q  316 gtaacagcatatcattgaatgtatgtgtaaaataactttacatcaatagaagatactaattatcttcaagaacgttggtaaga 398  Q
    |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891813 gtaacaacataccgttgaatgtatgtgtaaaataactttacatcaatagaagatactaattatcttcaagaacgttggtaaga 26891895  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 30856135 - 30856271
Alignment:
Q  17 ataaatgtattcaatattaatttttcatatatcaa-gacaattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaattt 115  Q
    |||||| |||| ||| || ||||||||||| |||| |||||||  || |||||| ||||| ||||||| | |||||||||||||||  ||||| ||||||    
T  30856135 ataaatatattaaatgttgatttttcatat-tcaacgacaattactagtattaacaagggatatagttaaaaaaagagtaatgaatacatctaaaaattt 30856233  T
Q  116 gtagatgattttgtatt--aggacaaacattttcttat 151  Q
     |||||||| || ||||   ||||||||| ||||||||    
T  30856234 atagatgatattatatttagggacaaacactttcttat 30856271  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 25487702 - 25487657
Alignment:
Q  173 tataattattttacacatttattcaatgatgtgttaccacatcaat 218  Q
    |||||||||||||||||| |||||||||||||||| |||| |||||    
T  25487702 tataattattttacacatatattcaatgatgtgttgccacgtcaat 25487657  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 45218501 - 45218408
Alignment:
Q  24 tattcaatattaatttttcatatatcaagacaa-ttgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttg 116  Q
    |||| ||| |||| |||||||||| |||||||| ||| |||||||||||||||||||| |||  ||||||  ||| |||| ||||| |||||||    
T  45218501 tatttaatgttaacttttcatataccaagacaaattggtaatattaataaggggtatatttggaaaaagatgaatcaatgcatctaaaaatttg 45218408  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 14478567 - 14478605
Alignment:
Q  169 agtgtataattattttacacatttattcaatgatgtgtt 207  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14478567 agtgtataattattttacacatttattcgatgatatgtt 14478605  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 41178103 - 41178156
Alignment:
Q  67 taataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtaga 120  Q
    |||||||||| |||| ||| |||||||||||||||| || || |||||||||||    
T  41178103 taataaggggaatagatgagaaaagagtaatgaatgcatataaaaatttgtaga 41178156  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 14511129 - 14511188
Alignment:
Q  94 taatgaatgtatctataaatttgtagatgattttgtatt--aggacaaacattttcttat 151  Q
    |||| |||||||||| ||||||||||||||| || ||||  |||||||||||||| ||||    
T  14511129 taataaatgtatctaaaaatttgtagatgatcttatatttaaggacaaacatttttttat 14511188  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 30588235 - 30588320
Alignment:
Q  36 atttttcatatatcaagacaattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagat 121  Q
    |||||||||||  ||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||  |||||| |||||||||||    
T  30588235 atttttcatattccaagataattgatagtattaataagaggtatagttgaaaaaagaataatgaatacatctatgaatttgtagat 30588320  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 30861988 - 30862079
Alignment:
Q  34 taatttttcatatatcaagacaa-ttgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagatgat 124  Q
    |||||||||||||| ||| |||| ||| ||||||||||||| ||| || ||   ||||||||||| |||||||||| ||||||||| |||||    
T  30861988 taatttttcatataccaaaacaaattggtaatattaataagaggtgtattttgaaaaagagtaataaatgtatctagaaatttgtatatgat 30862079  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 29892869 - 29892971
Alignment:
Q  24 tattcaatattaatttttcatatatcaagacaa-ttgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagatg 122  Q
    |||| ||| |||| |||||||||| ||| |||| ||| || ||||||||||||||||| |||| ||||||||||| | || |||||  |||||||| |||    
T  29892869 tatttaatgttaacttttcatataccaaaacaaattggtagtattaataaggggtatatttgaaaaaagagtaatcactgcatctaggaatttgtatatg 29892968  T
Q  123 att 125  Q
    |||    
T  29892969 att 29892971  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 47581715 - 47581646
Alignment:
Q  50 aagacaattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtag 119  Q
    |||||||||| || || |||||||||||||| |||| |||| ||||||||||| ||| | ||||||||||    
T  47581715 aagacaattggtagtaataataaggggtatacttgaaaaaatagtaatgaatgcatcgaaaaatttgtag 47581646  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 19531848 - 19531762
Alignment:
Q  38 ttttcatatatcaagaca-attgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagatga 123  Q
    ||||||||| |||||| | ||||||  || |||||||||||||  |||  ||||||||||| |||||||||| ||||||||| ||||    
T  19531848 ttttcatatttcaagatacattgatggtactaataaggggtatgtttggaaaaagagtaataaatgtatctaaaaatttgtaaatga 19531762  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 41162854 - 41162940
Alignment:
Q  33 ttaatttttcatatatcaagacaa-ttgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgta 118  Q
    |||| |||||||||  |||||||| ||| || |||||||||||| |||| |||  ||||||||||| |||| ||||| |||||||||    
T  41162854 ttaacttttcatattccaagacaaattggtagtattaataagggatatatttgggaaaagagtaataaatgcatctagaaatttgta 41162940  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 39172224 - 39172288
Alignment:
Q  57 ttgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagatg 122  Q
    |||||| ||||||||||||||||| |||| ||||||||||| ||  ||| || |||||||||||||    
T  39172224 ttgatagtattaataaggggtatatttgaaaaaagagtaat-aaaatatttagaaatttgtagatg 39172288  T

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Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 5109 - 5186
Alignment:
Q  23 gtattcaatattaatttttcatatatcaagacaattgataatattaataaggggtatagttgacaaaagagtaatgaat 101  Q
    ||||||||  || ||||||||||| |||| | |||||||||||||||||||| || ||||||| |||||||||||||||    
T  5109 gtattcaacgttgatttttcatatttcaaaataattgataatattaataaggtgt-tagttgaaaaaagagtaatgaat 5186  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 21120218 - 21120113
Alignment:
Q  29 aatattaatttttcatatatcaagacaattgataa-tattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagatgatttt 127  Q
    |||||||| |||| |||||||||||||| | || | ||||||||||||||||| |||  ||||||||||| |||  ||||| ||||||||| ||||| ||    
T  21120218 aatattaacttttgatatatcaagacaaattattagtattaataaggggtatatttggaaaaagagtaatcaatacatctagaaatttgtatatgatctt 21120119  T
Q  128 gtatta 133  Q
     |||||    
T  21120118 atatta 21120113  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 13807530 - 13807492
Alignment:
Q  320 cagcatatcattgaatgtatgtgtaaaataactttacat 358  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  13807530 cagcacatcattgaatgcatgtgtaaaataactttacat 13807492  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 49747201 - 49747172
Alignment:
Q  17 ataaatgtattcaatattaatttttcatat 46  Q
    ||||||||||||||||||||||||||||||    
T  49747201 ataaatgtattcaatattaatttttcatat 49747172  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 41153404 - 41153290
Alignment:
Q  16 cataaatgtattcaatattaatttttcatatatcaagacaattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaattt 115  Q
    |||||||||||| |||||| |||||||| ||  ||| | |||||||| |||||||||||  |||||||   |||||| |||| ||||||| || ||||||    
T  41153404 cataaatgtatttaatattgatttttcaaattccaaaataattgatagtattaataaggaatatagtt--aaaaagattaataaatgtatttagaaattt 41153307  T
Q  116 gtagatgattttgtatt 132  Q
     ||||||||||| ||||    
T  41153306 ttagatgattttatatt 41153290  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 40344303 - 40344201
Alignment:
Q  18 taaatgtattcaatattaatttttcatatatcaagacaattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgt 117  Q
    |||||| |||||||  ||||||||||||| | |||| ||||| || ||||||||| ||||| |||||| |||| | |||| |||| || |||||||||||    
T  40344303 taaatgaattcaatgataatttttcatattttaagataattggtagtattaataa-gggtaaagttgaaaaaataataataaatgcatatataaatttgt 40344205  T
Q  118 agat 121  Q
    ||||    
T  40344204 agat 40344201  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 14811286 - 14811186
Alignment:
Q  24 tattcaatattaatttttcatatatcaagac-aattgataatattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagatg 122  Q
    |||| |||| ||||||||||||||||||||| |||||||| ||||||||||||||| | |||| |||  |||||  |||| |||||  |||||||| |||    
T  14811286 tatttaataataatttttcatatatcaagacaaattgatagtattaataaggggtaaatttgaaaaacaagtaaccaatgcatctaagaatttgtatatg 14811187  T
Q  123 a 123  Q
    |    
T  14811186 a 14811186  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 32307270 - 32307336
Alignment:
Q  19 aaatgtattcaatattaatttttcatatatcaagacaattgataatattaataaggggtatagttga 85  Q
    ||||||||| ||| || |||||||||||  |||||||||| ||||||||||||||| ||| ||||||    
T  32307270 aaatgtatttaatgttgatttttcatattccaagacaattaataatattaataaggtgtaaagttga 32307336  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 26281014 - 26280972
Alignment:
Q  165 tgttagtgtataattattttacacatttattcaatgatgtgtt 207  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  26281014 tgttagtgtataattattttacacatgtattaaatgatgtgtt 26280972  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 32251213 - 32251269
Alignment:
Q  64 tattaataaggggtatagttgacaaaagagtaatgaatgtatctataaatttgtagat 121  Q
    ||||||||| |||||||||| | ||||||||||| |||| ||||| ||||||||||||    
T  32251213 tattaataaagggtatagttaa-aaaagagtaataaatgaatctaaaaatttgtagat 32251269  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 12027751 - 12027779
Alignment:
Q  224 aatgaatatgaaaacacatgagttgttat 252  Q
    |||||||||||||||||||||||||||||    
T  12027751 aatgaatatgaaaacacatgagttgttat 12027779  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 13056710 - 13056670
Alignment:
Q  178 ttattttacacatttattcaatgatgtgttaccacatcaat 218  Q
    |||||||||||||  ||||||||||||||| ||||||||||    
T  13056710 ttattttacacatgcattcaatgatgtgttgccacatcaat 13056670  T

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