View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_19 (Length: 398)
Name: NF14315_low_19
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 2084188 - 2083818
Alignment:
| Q |
18 |
cattcatgctatgcatttaaaccttgcagaataatgtctttcttccaagtatgtcaaacaatcacattggcaattgaagttgatgtgaagtttttatgtt |
117 |
Q |
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| T |
2084188 |
cattcatgccatgcatttaaaccttgcataataatgtctttcttccaagcatgtcaaacaatcacattggcaattgaagttgatgtgaagtttttatgtt |
2084089 |
T |
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| Q |
118 |
cattttattatagttttgatttccgggaaacacgattactctttgtggaaaaaataa-actggtttaaggtg-aaaatatattgtaatttaatttatata |
215 |
Q |
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| T |
2084088 |
cattttattatagttttgatttccggggaacacgattactctttgtggaaaaaaaaatattggtttaaggtgaaaaatatattgtaatttaatttatata |
2083989 |
T |
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| Q |
216 |
aattcacccaaaattgtaatattggtttgggtggtttaattagttaagcaacatttagcttgtgagggagaactggtgtttccacccctgaaagatttgg |
315 |
Q |
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| T |
2083988 |
aattcacccaaaattgtaatattggtttgggtggtttaattagttaagcaacatttagcttgtgagggagaactggtgtttccacccctgaaagatttgg |
2083889 |
T |
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| Q |
316 |
ccttaattaagagagaagaggagttttaagctgcaatttagactataagtattttactttactattagtattatt |
390 |
Q |
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| T |
2083888 |
cc----ttaagagagaagaggagttttaagctgcaatttagactataagtattttactttactattattattatt |
2083818 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 12629201 - 12629257
Alignment:
| Q |
232 |
taatattggtttgggtggtttaattagttaagcaacatttagcttgtgagggagaac |
288 |
Q |
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| T |
12629201 |
taatattggtttgggtgaatcaattacttaagcaacattgaggctgtgagggagaac |
12629257 |
T |
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