View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_20 (Length: 393)

Name: NF14315_low_20
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_20
NF14315_low_20
[»] chr7 (7 HSPs)
chr7 (13-160)||(32726460-32726607)
chr7 (150-309)||(32726132-32726290)
chr7 (304-393)||(32725976-32726065)
chr7 (310-356)||(35945128-35945174)
chr7 (311-356)||(35956335-35956380)
chr7 (311-356)||(35975790-35975835)
chr7 (311-356)||(35997202-35997247)
[»] chr1 (1 HSPs)
chr1 (313-352)||(18132442-18132481)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 32726607 - 32726460
Alignment:
Q  13 attcttcctttgataccctacctaactcgattgctaaattggagcatttgcgagttctcaaccttatcaataatcgcaaaatcagaagacttccccgatc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32726607 attcttcctttgataccctacctaactcgattgctaaattggagcatttgcgagttctcaaccttatcaataatcgcaaaatcagaagacttccccaatc 32726508  T
Q  113 tatttgcaagatttgagactcattggatgcacggagattgaaacattg 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32726507 tatttgcaagatttgagactcattggatgcacggagattgaaacattg 32726460  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 32726290 - 32726132
Alignment:
Q  150 ttgaaacattgactattctttcatgtggtagtctagagtccttac-ttacctctttttatttttcctaaattacaggatttgataatttcagactgtgag 248  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||    
T  32726290 ttgaaaaattgactattctttcatgtggtagtctagagtccttaccttacctcttt--atttttcctaaattacaggatctgataatttcagactgtcag 32726193  T
Q  249 atgataaacctatcattatacaataaaagaccaatccaaagattgatgatgaaacatttat 309  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32726192 atgataaacctatcattgtacaataaaagaccaatccaaagattgatgatgaaacatttat 32726132  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 32726065 - 32725976
Alignment:
Q  304 atttatgactgttgagtcttccaagtgacatgcatcgcctcactacccttgaatacttggagggttgtccggaaaatgttaacctcagtc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32726065 atttttgactgttgagtcttccaagtgacatgcatcgcctcactacccttgaatacttggagggttgtccggaaaatgttaaccacagtc 32725976  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 35945174 - 35945128
Alignment:
Q  310 gactgttgagtcttccaagtgacatgcatcgcctcactacccttgaa 356  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||    
T  35945174 gactgttgagtcttccaagtgacatgcatcgcctcaccgcccttgaa 35945128  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 35956380 - 35956335
Alignment:
Q  311 actgttgagtcttccaagtgacatgcatcgcctcactacccttgaa 356  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||    
T  35956380 actgttgagtcttccaagtaacatgcatcgcctcaccgcccttgaa 35956335  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 35975835 - 35975790
Alignment:
Q  311 actgttgagtcttccaagtgacatgcatcgcctcactacccttgaa 356  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||    
T  35975835 actgttgagtcttccaagtgatatgcatcgcctcaccgcccttgaa 35975790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 35997247 - 35997202
Alignment:
Q  311 actgttgagtcttccaagtgacatgcatcgcctcactacccttgaa 356  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||    
T  35997247 actgttgagtcttccaagtgatatgcatcgcctcaccgcccttgaa 35997202  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 18132481 - 18132442
Alignment:
Q  313 tgttgagtcttccaagtgacatgcatcgcctcactaccct 352  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  18132481 tgttgagtcttccaagtggcatgcatcgtctcactaccct 18132442  T

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