View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_22 (Length: 368)
Name: NF14315_low_22
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 59 - 351
Target Start/End: Complemental strand, 26217187 - 26216895
Alignment:
| Q |
59 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc |
158 |
Q |
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| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt |
26217088 |
T |
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| Q |
159 |
attaagaatcgcctcactggagctattctgcttttaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg |
258 |
Q |
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| T |
26217087 |
attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg |
26216988 |
T |
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| Q |
259 |
ccatcttcatctctaaggctagttattcggttagccttctttctagttgtagctgcaacatgaaagaatttgttgtttaatctccatccttat |
351 |
Q |
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| T |
26216987 |
ccatcttcatctctaaggctagttattcggttagccttctttctagttgtagctgcaacatgaaagaatttgttgtttaatctccatccttat |
26216895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 26217298 - 26217246
Alignment:
| Q |
10 |
cagagaccttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc |
62 |
Q |
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| T |
26217298 |
cagagaccttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc |
26217246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 16322611 - 16322575
Alignment:
| Q |
293 |
ccttctttctagttgtagctgcaacatgaaagaattt |
329 |
Q |
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| T |
16322611 |
ccttctttctagatatagctgcaacatgaaagaattt |
16322575 |
T |
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