View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14315_low_29 (Length: 331)
Name: NF14315_low_29
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_29 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 18913671 - 18913987
Alignment:
| Q |
1 |
cacactaacagacggttcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18913671 |
cacactaacagacggttcaacgggtggtgcttcaacaaaaccgctaggtggcaacaactgttggtatgtctctgtagccaaatcaagcgagactatcaca |
18913770 |
T |
|
| Q |
101 |
aattgttcaatggtaatatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttatccatcattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18913771 |
aattgttcaatggtaatatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttatccatcatca |
18913870 |
T |
|
| Q |
201 |
ggcgggaacagatacgaaggttaaacgggacaataggaaaacttggaatatccttccatacattatcgcctagactgaaaactttcacggtgatagcaga |
300 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18913871 |
ggcgggaatagatacgaaggttaaacgggacaataggaaaacttggaatatccttccatacattatcacctagactgaaaactttcacggtgatagcaga |
18913970 |
T |
|
| Q |
301 |
gaatcctaccaccttat |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
18913971 |
gaatcctaccaccttat |
18913987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 18908923 - 18909242
Alignment:
| Q |
1 |
cacactaacagacggttcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcaca |
100 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |
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| T |
18908923 |
cacactaacagacggttcaacaggtggtacttcaacaaaaccgctaggtggcagcaattgccgatatgtctctgtatccaaatcaagcgagactatcaca |
18909022 |
T |
|
| Q |
101 |
aattgttcaatggtaatatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttatccatcattg |
200 |
Q |
| |
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||||||| || |||||||||||||||| ||| | ||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| || | |
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| T |
18909023 |
aattgtttgatagtaatatcattccattcatattcagtcttatctcgaatagccaaccagttaatagaaccactcacatacacaccgttatccaccaatc |
18909122 |
T |
|
| Q |
201 |
ggcgggaacagatac---gaaggttaaacgggacaataggaaaacttggaatatccttccatacattatcgcctagactgaaaactttcacggtgatagc |
297 |
Q |
| |
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| || || ||||| ||| || |||||| ||||||||||||||||||||||| |||| |||||||| | | ||||||||||||||| ||| |||| |
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| T |
18909123 |
gacgacaatggatacgatgaatgtcaaacggaacaataggaaaacttggaatatctctccaaacattatccctcaaactgaaaactttcactgtgttagc |
18909222 |
T |
|
| Q |
298 |
agagaatcctaccaccttat |
317 |
Q |
| |
|
||||||| | |||||||||| |
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|
| T |
18909223 |
agagaatgccaccaccttat |
18909242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 18920879 - 18921027
Alignment:
| Q |
1 |
cacactaacagacggttcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcaca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||| |
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|
| T |
18920879 |
cacactaacagacggttcaacaggtggtacttcaacaaaaccgctaggtggcagcaattgccgatatgtctctgtaaccaaatcaagcgagactatcaca |
18920978 |
T |
|
| Q |
101 |
aattgttcaatggtaatatcattccatttataattggtcatatctcgaa |
149 |
Q |
| |
|
||||||| || |||||||||||||||| ||| | ||| ||||||||| |
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|
| T |
18920979 |
aattgtttgatagtaatatcattccattcatattcagtcttatctcgaa |
18921027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 18921075 - 18921169
Alignment:
| Q |
223 |
aaacgggacaataggaaaacttggaatatccttccatacattatcgcctagactgaaaactttcacggtgatagcagagaatcctaccaccttat |
317 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||| |||||||| | | ||||||||||||||| ||| |||||||||| | |||||||||| |
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| T |
18921075 |
aaacggaacaataggaaaactttgaatatccctccaaacattatcactcaaactgaaaactttcaccgtgttagcagagaagtccaccaccttat |
18921169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 19351205 - 19351368
Alignment:
| Q |
23 |
ggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattgttcaatggtaatatcat |
122 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||| |||||||| ||| ||| |||||| || | ||||||||||| || || ||||||||| |
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| T |
19351205 |
ggtggtacttcaacaaaaccacgaggtggcaaaaactgttgatatgtctccgtacccagatcaagtgaaataatcacaaattgctcgattctaatatcat |
19351304 |
T |
|
| Q |
123 |
tccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacacc |
186 |
Q |
| |
|
|||||||||| || || |||| | ||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
19351305 |
tccatttatatttagtaatattttgaatagccaaccagttaatagatccactcacatacacacc |
19351368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 19357844 - 19357681
Alignment:
| Q |
23 |
ggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattgttcaatggtaatatcat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||| || |||| |||||| ||||| ||||||||||| ||||| ||||||||| |
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| T |
19357844 |
ggtggtacttcaacaaaaccgctaggtggcagcaactgcctatatgtctccgtggccagatcaagtgagacgatcacaaattgatcaattgtaatatcac |
19357745 |
T |
|
| Q |
123 |
tccatttata---attggtcatatctcgaatagccaaccagttaattgttccactcacatacac |
183 |
Q |
| |
|
||||| ||| || ||||||| ||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
19357744 |
gccattcatattgatcagtcatatttcgaatagccaaccagttaatagtgcctctcacatacac |
19357681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 19721972 - 19721787
Alignment:
| Q |
6 |
taacagacggttcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattg |
105 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||| || ||||||||||| ||||| |||||||| ||||||| |||||||||||| || |||||||| |
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|
| T |
19721972 |
taacagacggctcaacagttggtacttcaacaaacccctcaggtggcaacagctgttgatatgtctccgtagccagatcaagcgagacaattacaaattg |
19721873 |
T |
|
| Q |
106 |
ttcaatggtaatatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttat |
191 |
Q |
| |
|
|| | ||||||| |||||| ||| | ||| | | ||||||||||||||||||||| || || |||||||| ||||| |||| |
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|
| T |
19721872 |
ctcgactaaaatatcagtccattgatactcagtcgtgtttcgaatagccaaccagttaatagtgccgctcacataaacaccattat |
19721787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 19779542 - 19779368
Alignment:
| Q |
17 |
tcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattgttcaatggtaa |
116 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||| ||| |||| ||| ||||| |||| || |||||| |||| || | |||||| ||||| | || |
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|
| T |
19779542 |
tcaacaggtggtacatcaacaaatccctgaggtggccgcaaatgttggtacgtctcggtagtcagatcaagtgagaggatgagaaattgatcaattgaaa |
19779443 |
T |
|
| Q |
117 |
tatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttat |
191 |
Q |
| |
|
|||||||||| | ||| | |||| ||| | |||||| |||||||||||| || ||||||||||| ||||| |||| |
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|
| T |
19779442 |
tatcattccactcatattcggtcttattttgaatagtcaaccagttaatagtgccactcacataaacaccattat |
19779368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 19887841 - 19888015
Alignment:
| Q |
17 |
tcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattgttcaatggtaa |
116 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||| ||| |||| ||| ||||| |||| || |||||| |||| || | |||||| ||||| | || |
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|
| T |
19887841 |
tcaacaggtggtacatcaacaaatccctgaggtggccgcaaatgttggtacgtctcggtagtcagatcaagtgagaggatgagaaattgatcaattgaaa |
19887940 |
T |
|
| Q |
117 |
tatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttat |
191 |
Q |
| |
|
|||||||||| | ||| | |||| ||| | |||||| |||||||||||| || ||||||||||| ||||| |||| |
|
|
| T |
19887941 |
tatcattccactcatattcggtcttattttgaatagtcaaccagttaatagtgccactcacataaacaccattat |
19888015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 15572088 - 15572139
Alignment:
| Q |
65 |
tatgtctctgtagccaaatcaagcgagactatcacaaattgttcaatggtaa |
116 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
15572088 |
tatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaa |
15572139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 8012 - 7832
Alignment:
| Q |
6 |
taacagacggttcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattg |
105 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||| | ||||||| |||||| ||||||||||||||| | |||| || || ||||||||||| |
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|
| T |
8012 |
taacagatggctcaacaggtggtacttcaacaaaaccgttgggtggcagcaactgcctaaatgtctctgtagccagaacaagtgatacgatcacaaattg |
7913 |
T |
|
| Q |
106 |
ttcaatggtaatatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacacc |
186 |
Q |
| |
|
| || | |||||||||||||| ||| | |||||| |||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
7912 |
gttgattgaaatatcattccattcatattcattcatatttcgaatagccaaccagttaacagtgccactcacatacgcacc |
7832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 32578995 - 32579169
Alignment:
| Q |
17 |
tcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattgttcaatggtaa |
116 |
Q |
| |
|
||||| ||||||||||||||||| || | ||||| ||| ||| ||||||||| |||| || |||||| || | || | |||||| || || | || |
|
|
| T |
32578995 |
tcaaccggtggtacttcaacaaatccctgcgatggcagcaaatgtcggtatgtctccgtagtcagatcaagtgataaaatgagaaattgctcgattgaaa |
32579094 |
T |
|
| Q |
117 |
tatcattccatttataattggtcatatctcgaatagccaaccagttaattgttccactcacatacacaccgttat |
191 |
Q |
| |
|
||||||||| || ||| | ||| ||| ||||||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
32579095 |
tatcattcctttcatattcagtcttatttcgaatagccaaccaattaatagtgccactcacatacacaccgttat |
32579169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 12734909 - 12735008
Alignment:
| Q |
6 |
taacagacggttcaacgggtggtacttcaacaaaaccgctaggtggcaacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattg |
105 |
Q |
| |
|
||||||| || ||||| ||||||| ||||||||||||| | |||||||||||||| ||||||||||||||| | |||| || || ||||||||||| |
|
|
| T |
12734909 |
taacagatggctcaacaggtggtatttcaacaaaaccgttgggtggcaacaactgcctaaatgtctctgtagccagaacaagtgatacgatcacaaattg |
12735008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 20770554 - 20770502
Alignment:
| Q |
53 |
aacaactgttcgtatgtctctgtagccaaatcaagcgagactatcacaaattg |
105 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||| |||| ||||||||||| |
|
|
| T |
20770554 |
aacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaattg |
20770502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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