View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_30 (Length: 314)

Name: NF14315_low_30
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_30
NF14315_low_30
[»] chr4 (1 HSPs)
chr4 (1-297)||(51393751-51394047)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 51393751 - 51394047
Alignment:
Q  1 cttttccccacgccaaatcacagaaaaatagagtagttctaagaaaattaacattgaagttccacccaaattcttccccatctgctatgttctgcttgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51393751 cttttccccacgccaaatcacagaaaaatagagtagttctaagaaaattaacattgaagttccacccaaattcttccccatctgctatgttctgcttgcc 51393850  T
Q  101 caggtcatcgtctcctgatttgcaatgtaagctcatgtttttcccagacccaagtctgttttttatgctcacatgtttggtgcctgcaacaaggctgcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51393851 caggtcatcgtctcctgatttgcaatgtaagctcatgtttttcccagacccaagtctgttttttatgctcacatgtttggtgcctgcaacaaggctgcat 51393950  T
Q  201 aatccaattacaagaaacaggatcatgacatggtttaccttacataaatattgtgcttccatttaggctacccttttggttctttgaagaagagaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51393951 aatccaattacaagaaacaggatcatgacatggtttaccttacataaatattgtgcttccatttaggctacccttttggttctttgaagaagagaac 51394047  T

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