View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_33 (Length: 293)
Name: NF14315_low_33
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 31185197 - 31185460
Alignment:
| Q |
19 |
attaactcattgaaatactctattgtatatataataatatccttgtctttttcttgtttcttctgttgtaagctttgaatatttcttgtttcttctgctg |
118 |
Q |
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| T |
31185197 |
attaactcattgaaatactctattgtatatataataatatccttgtctttttcttgtttcttctgttgtaagctttgaatatttcttgtttcttctgctg |
31185296 |
T |
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| Q |
119 |
taagctttgcatattaattgttgcttctgttgtaagttttgtatataatcaagttgatataaataacatttcaatgtgaatttggttttataatgaaaag |
218 |
Q |
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| T |
31185297 |
taagctttgcatattaattgttgcttctgttgtaatttttgtatataatcaagttgatataaataacatttcaatgtgaatttggttttataatgaaaag |
31185396 |
T |
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| Q |
219 |
ctaattcatttcattaaaagtcaaataatcaataaaaggaacatgtcaaaataaatatgagaat |
282 |
Q |
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| T |
31185397 |
ctaattcatttcattaaaagtcaaataatcaataaaaggaacatgtcaaaataaatatgagaat |
31185460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 31104213 - 31104288
Alignment:
| Q |
19 |
attaactcattgaaatactctattgtata----tataataatatccttgtctttttcttgtttcttctgttgtaag |
90 |
Q |
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||||| || |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
31104213 |
attaagtcgttgaaatactctattgtatatatatataataataacctagtctttttcttgtttcttctcttgtaag |
31104288 |
T |
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