View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_34 (Length: 280)

Name: NF14315_low_34
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_34
NF14315_low_34
[»] chr7 (4 HSPs)
chr7 (16-266)||(21780753-21781003)
chr7 (62-266)||(18341768-18341972)
chr7 (178-239)||(7305962-7306023)
chr7 (175-244)||(19764281-19764350)
[»] chr8 (3 HSPs)
chr8 (62-266)||(16375665-16375879)
chr8 (17-266)||(9763305-9763565)
chr8 (76-141)||(16375597-16375662)
[»] chr2 (2 HSPs)
chr2 (18-264)||(7094563-7094819)
chr2 (175-248)||(11882075-11882148)
[»] chr6 (2 HSPs)
chr6 (62-266)||(28679185-28679389)
chr6 (51-266)||(4968378-4968603)
[»] scaffold1414 (1 HSPs)
scaffold1414 (62-266)||(1283-1487)
[»] scaffold0214 (1 HSPs)
scaffold0214 (53-266)||(123-337)
[»] chr4 (2 HSPs)
chr4 (175-236)||(32215210-32215271)
chr4 (175-246)||(16924321-16924392)
[»] scaffold0260 (2 HSPs)
scaffold0260 (141-225)||(1103-1187)
scaffold0260 (63-131)||(1015-1083)
[»] chr1 (3 HSPs)
chr1 (141-225)||(20338780-20338864)
chr1 (175-248)||(34678535-34678608)
chr1 (63-131)||(20338692-20338760)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 21780753 - 21781003
Alignment:
Q  16 gaggcacagaacgggagggaaaaagcgtgggcgtgctgcaatttgtgaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgt 115  Q
    ||||| |||||||| ||||||||||||  |||  ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21780753 gaggcgcagaacggcagggaaaaagcgacggctagctgcaatttccgaggggtttagcccctggcaggcctgcaacggaccagctttcccagcgccttgt 21780852  T
Q  116 caagtcaaccggaaaaaggctgacatttgcgcatccgaggggcgcatccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttt 215  Q
    ||| |||||||||||||| ||| ||||||||||||||||||||  | |||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  21780853 caactcaaccggaaaaagcctgccatttgcgcatccgaggggcaaagccctggcataagccgtcggttttctctgacacagtagagattccttcagcttt 21780952  T
Q  216 tgaattttcaaactggcgcctaaacaaaagccacgccattttacaaaaaac 266  Q
    || |||||||||||  |||||||||||||||||||||||||||||||||||    
T  21780953 tggattttcaaactcccgcctaaacaaaagccacgccattttacaaaaaac 21781003  T

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Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 62 - 266
Target Start/End: Original strand, 18341768 - 18341972
Alignment:
Q  62 gaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgacatttgcgcatccgaggggcgca 161  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||| |||||||||| |||||||||||||| |||  |||||||||||||||||||  |    
T  18341768 gaggggtttagcccctggcacgcctgcaacagacacgctttcccagcgccttgtcaactcaaccggaaaaagcctgcaatttgcgcatccgaggggcaaa 18341867  T
Q  162 tccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagccacgccattttacaa 261  Q
     |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| | ||||||||||    
T  18341868 gccctggcataagtcgtcggttttctctgacacagcagagattccttcagcttttggattttcaaactcccgcctaaacaaaagccagggcattttacaa 18341967  T
Q  262 aaaac 266  Q
    |||||    
T  18341968 aaaac 18341972  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 7305962 - 7306023
Alignment:
Q  178 tcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaa 239  Q
    |||||||||||| ||| |||||||||||| |||| |||| ||  ||||||||||||||||||    
T  7305962 tcggttttctctgacatagcagagattccctcagattttcaaaattcaaactggcgcctaaa 7306023  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 19764281 - 19764350
Alignment:
Q  175 ccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaa 244  Q
    ||||||||||||||| ||| |||||||||||| |||| |||| ||  ||||| |||||||||||| ||||    
T  19764281 ccgtcggttttctctgacatagcagagattccctcagattttaaaaattcaatctggcgcctaaaaaaaa 19764350  T

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Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 62 - 266
Target Start/End: Original strand, 16375665 - 16375879
Alignment:
Q  62 gaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgacatt----------tgcgcatcc 151  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||          |||||||||    
T  16375665 gaggtgtttagcctctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggatgacattctttgaattttgcgcatcc 16375764  T
Q  152 gaggggcgcatccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagccacgc 251  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16375765 gaggggcgcatccttggcagaagccgttggttttctctgacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagccacgc 16375864  T
Q  252 cattttacaaaaaac 266  Q
    |||||||||||||||    
T  16375865 cattttacaaaaaac 16375879  T

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Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 9763565 - 9763305
Alignment:
Q  17 aggcacagaacgggagggaaaaagcgtggg-cgtgctgcaatttgtgaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgt 115  Q
    ||||||||||||||  | |||||||| ||| | | |||||||  | |||||||||||||| |||||||||||||||||||||||||||||||  ||||||    
T  9763565 aggcacagaacgggttgcaaaaagcgaggggcatactgcaataagcgaggggtttagcccgtggcaggcctgcaacggaccagctttcccagacccttgt 9763466  T
Q  116 caagtcaaccggaaaaaggctgacattt----------gcgcatccgaggggcgcatccctggcagaagccgtcggttttctctaacacagcagagattc 205  Q
    ||||||||| |||||||||||||||||           |||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  9763465 caagtcaacaggaaaaaggctgacattctttgaatttcgcgcatccgaggggtgcatccctggcataagccgtcggttttctctgacacagcagagattc 9763366  T
Q  206 cttcagcttttgaattttcaaactggcgcctaaacaaaagccacgccattttacaaaaaac 266  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  9763365 cttcagcttttgaattttcaaactggcgcctaaactaaagccacggcattttacaaaaaac 9763305  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 16375597 - 16375662
Alignment:
Q  76 ctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgacat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  16375597 ctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaatcgaaaaaaggctgacat 16375662  T

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Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 7094563 - 7094819
Alignment:
Q  18 ggcacagaacgggagggaaaaagcgtgggcgtgctgcaatttgtgaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtca 117  Q
    |||||| ||||||  | |||||||| |||| | |||||||  | ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7094563 ggcacataacgggttgcaaaaagcgagggcatactgcaataagcgaggggtttagcccctggcaggcctgcaacggaccagctttcccaggcccttgtca 7094662  T
Q  118 agtcaaccggaaaaaggctgaca----------tttgcgcatccgaggggcgcatccctggcagaagccgtcggttttctctaacacagcagagattcct 207  Q
    ||||||| |||||| ||||||||          |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  7094663 agtcaacaggaaaatggctgacaatctttgaattttgcgcatccgaggggcgcatccctggcataagctgtcggttttctctaacacagcagagattcct 7094762  T
Q  208 tcagcttttgaattttcaaactggcgcctaaacaaaagccacgccattttacaaaaa 264  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  7094763 tcagcttttgaattttcaaactggcgcctaaactaaaaccacgacattttacaaaaa 7094819  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 11882075 - 11882148
Alignment:
Q  175 ccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagcca 248  Q
    ||||||||||||||| ||| |||||||||||| | || |||| ||  ||||||||||||||||||  |||||||    
T  11882075 ccgtcggttttctctgacatagcagagattcccttagattttcaaaattcaaactggcgcctaaaataaagcca 11882148  T

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Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 62 - 266
Target Start/End: Complemental strand, 28679389 - 28679185
Alignment:
Q  62 gaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgacatttgcgcatccgaggggcgca 161  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||| |||||||||| |||||||| ||||| |||  |||||||||||||||||||  |    
T  28679389 gaggggtttagcccctggcacgcctgcaacagacacgctttcccagcgccttgtcaactcaaccggtaaaagcctgcaatttgcgcatccgaggggcaaa 28679290  T
Q  162 tccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagccacgccattttacaa 261  Q
     |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||| ||||||||||    
T  28679289 gccctggcataagccgtcggttttctctgacacagcagagattccttcagcttttggattttcaaactcccgcctaaacaaaagccacggcattttacaa 28679190  T
Q  262 aaaac 266  Q
    |||||    
T  28679189 aaaac 28679185  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 51 - 266
Target Start/End: Complemental strand, 4968603 - 4968378
Alignment:
Q  51 ctgcaatttgtgaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgaca---------- 140  Q
    ||||||| || |||||||||||||||||| || ||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||              
T  4968603 ctgcaatatgcgaggggtttagcccctggtagacctgcaacggaccagctttcccaggcccttgtcaagtcaacaggaaaatggctgacaatctttgaat 4968504  T
Q  141 tttgcgcatccgaggggcgcatccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaac 240  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4968503 tttgcacatccgaggggcacatccctggcataagccgtcggttttctctgacacagcagagattccttcagcttttgaatttttaaactggcgcctaaac 4968404  T
Q  241 aaaagccacgccattttacaaaaaac 266  Q
     ||| ||| | |||||||||||||||    
T  4968403 taaaaccagggcattttacaaaaaac 4968378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 266
Target Start/End: Complemental strand, 1487 - 1283
Alignment:
Q  62 gaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgacatttgcgcatccgaggggcgca 161  Q
    |||||||||| |||||||||  |||||||| |||  |||||||||| |||||||||| |||||||||||||| |||  ||||||||||||||||| |  |    
T  1487 gaggggtttatcccctggcacccctgcaacagacacgctttcccagcgccttgtcaactcaaccggaaaaagcctgcaatttgcgcatccgagggacaaa 1388  T
Q  162 tccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagccacgccattttacaa 261  Q
     |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||| | ||||||||||    
T  1387 gccctggcataagccgtcggttttctctgacacagcagagattccttcagcttttggattttcaaagtcccgcctaaacaaaagccagggcattttacaa 1288  T
Q  262 aaaac 266  Q
    |||||    
T  1287 aaaac 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 266
Target Start/End: Original strand, 123 - 337
Alignment:
Q  53 gcaatttgtgaggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaaaggctgacatttgcgcatccg 152  Q
    |||||||  |||||||||||||||||||| ||||||| |  ||  |||||||||| |||||||||| |||||||||||||| |||  |||| ||||||||    
T  123 gcaatttccgaggggtttagcccctggcacgcctgcagcatacacgctttcccagcgccttgtcaactcaaccggaaaaagcctgcaatttacgcatccg 222  T
Q  153 aggggcgcatccctggcagaagccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagccacgcc 252  Q
    ||||||  | |||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  223 aggggcaaagccctggcataagccgtcggttttctctgacacaccagagattccttcagcttttggattttcaaaatcccgcctaaacaaaagccacgcc 322  T
Q  253 a-ttttacaaaaaac 266  Q
    | |||||||||||||    
T  323 atttttacaaaaaac 337  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 32215271 - 32215210
Alignment:
Q  175 ccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcct 236  Q
    ||||||||||||||| ||| |||||||||||| |||| |||| ||  |||||||||||||||    
T  32215271 ccgtcggttttctctgacatagcagagattccctcagattttcaaaattcaaactggcgcct 32215210  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 16924321 - 16924392
Alignment:
Q  175 ccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagc 246  Q
    ||||||||||||| | ||| |||||||||||| |||| |||| ||  ||||| |||||||||||| ||||||    
T  16924321 ccgtcggttttctttgacatagcagagattccctcagattttaaaaattcaatctggcgcctaaaaaaaagc 16924392  T

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Target: scaffold0260 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 1103 - 1187
Alignment:
Q  141 tttgcgcatccgaggggcgcatccctggcagaagccgtcggttttct-ctaacacagcagagattccttcagcttttgaattttca 225  Q
    |||||||||||||||||||  ||||||||| || ||||||||||| | || |||||||||| ||| |  ||||||||||| |||||    
T  1103 tttgcgcatccgaggggcgtttccctggcataatccgtcggttttgtcctgacacagcagaaatttc-acagcttttgaaatttca 1187  T

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Target: scaffold0260; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 1015 - 1083
Alignment:
Q  63 aggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaa 131  Q
    |||||||  |||||||||| ||||||||   ||||||||| ||||  |||||||||||||||| |||||    
T  1015 aggggttatgcccctggcatgcctgcaagcaaccagcttttccaggcccttgtcaagtcaacctgaaaa 1083  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 20338780 - 20338864
Alignment:
Q  141 tttgcgcatccgaggggcgcatccctggcagaagccgtcggttttct-ctaacacagcagagattccttcagcttttgaattttca 225  Q
    |||||||||||||||||||  ||||||||| || ||||||||||| | || |||||||||| ||| |  ||||||||||| |||||    
T  20338780 tttgcgcatccgaggggcgtttccctggcataatccgtcggttttgtcctgacacagcagaaatttc-acagcttttgaaatttca 20338864  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 34678535 - 34678608
Alignment:
Q  175 ccgtcggttttctctaacacagcagagattccttcagcttttgaattttcaaactggcgcctaaacaaaagcca 248  Q
    ||||||||||||||| ||| ||||| |||||| | || |||| ||  ||||||||||||||||||  |||||||    
T  34678535 ccgtcggttttctctgacatagcagggattcccttagattttcaaaattcaaactggcgcctaaaataaagcca 34678608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 20338692 - 20338760
Alignment:
Q  63 aggggtttagcccctggcaggcctgcaacggaccagctttcccagtgccttgtcaagtcaaccggaaaa 131  Q
    |||||||  |||||||||| ||||||||   ||||||||| ||||  |||||||||||||||| |||||    
T  20338692 aggggttatgcccctggcatgcctgcaagcaaccagcttttccaggcccttgtcaagtcaacctgaaaa 20338760  T

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