View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_35 (Length: 275)
Name: NF14315_low_35
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 53 - 263
Target Start/End: Original strand, 25690409 - 25690619
Alignment:
| Q |
53 |
gaaccgcatattcataggctttgaatagacatgagaaattttagaataattcggattgtatttgtcgaaatttggtttggattataattgtcgagcaaat |
152 |
Q |
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| T |
25690409 |
gaaccgcatattcataggctttgaatagacatgagaaattttaaaataattcggattgtatttgtcgaaatttggttcggattataattgttgagcaaat |
25690508 |
T |
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| Q |
153 |
gatatttttgaaagnnnnnnntagggtgcatgagtaacacaggggggaaaaaacaatagccttnnnnnnntgttgttctttctctttcagtcgactctca |
252 |
Q |
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| T |
25690509 |
gatatttttgaaagaaaaaaatagggtgcatgagtaacacaggggggaaaaaacaatagccttaaaaaaatgtcgttctttctctttcactcgactctca |
25690608 |
T |
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| Q |
253 |
tttttcttctc |
263 |
Q |
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| T |
25690609 |
tttttcttctc |
25690619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 25689587 - 25689524
Alignment:
| Q |
52 |
cgaaccgcatattcataggctttgaatagacatgagaaattttagaataattcggattgtattt |
115 |
Q |
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| T |
25689587 |
cgaactgcatatttacaagctttgaatagacatgagcaattttagaacagttcggattgtattt |
25689524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 5588464 - 5588373
Alignment:
| Q |
7 |
attctatttgcagaacacttttttaatatttcgacaaatacaattcgaaccgcatattcataggctttgaatagacatgagaaattttagaa |
98 |
Q |
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| T |
5588464 |
attctatttaccgaacattttttcaaggtttcggaaaatataatccaaactgcatattcataggctttgaataaatatgagcaattttagaa |
5588373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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