View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_36 (Length: 275)
Name: NF14315_low_36
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 31347020 - 31347260
Alignment:
| Q |
19 |
aaacatccatttgttttgaagaggatgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31347020 |
aaacatccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttg |
31347119 |
T |
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| Q |
119 |
agagaaatcagaaagagtgttttggttttcactattgtatggagaagaatccaataattgaggcaattgagattcattagtatttgatggtccttctcta |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31347120 |
agagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatggtccttctcta |
31347219 |
T |
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| Q |
219 |
gaggagttaaaccttccatgttttgaaccatcctttttctt |
259 |
Q |
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| T |
31347220 |
gaggagttaaaccttccatgttttgaaacatcctttttctt |
31347260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 31357680 - 31357920
Alignment:
| Q |
19 |
aaacatccatttgttttgaagaggatgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttg |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357680 |
aaacatccaattgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttg |
31357779 |
T |
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| Q |
119 |
agagaaatcagaaagagtgttttggttttcactattgtatggagaagaatccaataattgaggcaattgagattcattagtatttgatggtccttctcta |
218 |
Q |
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| T |
31357780 |
agagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatggtccttctcta |
31357879 |
T |
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| Q |
219 |
gaggagttaaaccttccatgttttgaaccatcctttttctt |
259 |
Q |
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| T |
31357880 |
gaggagttaaaccttccatgttttgaaccatcctttttctt |
31357920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 29272392 - 29272304
Alignment:
| Q |
19 |
aaacatccatttgttttgaagaggatgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
107 |
Q |
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| T |
29272392 |
aaacatccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttttggtttc |
29272304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 2920355 - 2920267
Alignment:
| Q |
19 |
aaacatccatttgttttgaagaggatgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2920355 |
aaacatccatttgttttgaagaggatgaaatgttcaagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttgatttc |
2920267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 2925740 - 2925652
Alignment:
| Q |
19 |
aaacatccatttgttttgaagaggatgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
2925740 |
aaacatccatttgttttgaagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttggtttc |
2925652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 2925612 - 2925470
Alignment:
| Q |
120 |
gagaaatcagaaagagtgttttggttttcactattgtatggagaagaatccaataattgaggcaattgagattc---attagtatttgatggtccttctc |
216 |
Q |
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|||||||||| || |||| ||| |||||||||||||| |||||| | ||||| ||| ||| | || ||||| | |||||||||||||||| |||||| |
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| T |
2925612 |
gagaaatcaggaatagtgattttattttcactattgtagggagaaaattccaaaaatggagcccatagagatgctgcattagtatttgatggttcttctc |
2925513 |
T |
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| Q |
217 |
tagaggagttaaaccttccatgttttgaaccatcctttttctt |
259 |
Q |
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||||||||||| |||||||| |||||||||||| | ||||||| |
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| T |
2925512 |
tagaggagttagaccttccaagttttgaaccattcattttctt |
2925470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 2920241 - 2920170
Alignment:
| Q |
178 |
gaggcaattgagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccat |
249 |
Q |
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|||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2920241 |
gaggcaatagagttgcattagtatttgatggtccttctctagaggagttagaccttccaagttttgaaccat |
2920170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 9447763 - 9447671
Alignment:
| Q |
19 |
aaacatccatttgttttgaagaggatgaaatgttcaagatg----ctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
9447763 |
aaacatccatttgttttgaagaggatgaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtgtttttggtttc |
9447671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 9447611 - 9447549
Alignment:
| Q |
158 |
tggagaagaatccaataattgaggcaattgagattcattagtatttgatggtccttctctaga |
220 |
Q |
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||||||| ||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
9447611 |
tggagaataatccaacaatggaggcaatagagatgcattagtatttgatggtccttctctaga |
9447549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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