View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_39 (Length: 261)

Name: NF14315_low_39
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_39
NF14315_low_39
[»] chr1 (14 HSPs)
chr1 (16-261)||(27777345-27777590)
chr1 (17-261)||(27782371-27782615)
chr1 (101-246)||(27780947-27781092)
chr1 (142-226)||(38227213-38227300)
chr1 (161-232)||(38227135-38227206)
chr1 (161-231)||(38226992-38227062)
chr1 (161-232)||(38227063-38227134)
chr1 (193-246)||(27781156-27781209)
chr1 (195-246)||(27781080-27781131)
chr1 (164-232)||(17663550-17663618)
chr1 (193-246)||(27781195-27781248)
chr1 (169-232)||(17700361-17700424)
chr1 (196-246)||(27781120-27781170)
chr1 (187-224)||(21079010-21079047)
[»] chr7 (1 HSPs)
chr7 (105-231)||(440929-441055)
[»] chr4 (4 HSPs)
chr4 (145-232)||(35250178-35250265)
chr4 (105-232)||(51220034-51220161)
chr4 (142-226)||(51220827-51220911)
chr4 (142-174)||(51220427-51220459)
[»] chr8 (1 HSPs)
chr8 (105-174)||(44989768-44989837)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 27777345 - 27777590
Alignment:
Q  16 actaagaagaataagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatagctcacggcggtttcgagacaccacaagattgc 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  27777345 actaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattga 27777444  T
Q  116 aaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacg 215  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777445 aaggaacctactgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacg 27777544  T
Q  216 agcttccaagtaatgatgtgatgaattttgagcttccatgtgatga 261  Q
    ||||||||||||||||||||||||||||||||||| || |||||||    
T  27777545 agcttccaagtaatgatgtgatgaattttgagcttacaagtgatga 27777590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 27782615 - 27782371
Alignment:
Q  17 ctaagaagaataagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatagctcacggcggtttcgagacaccacaagattgca 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  27782615 ctaagaagaagaagttacatgaataatgatgatgatgctattgcagctgaaactctattgcatatatctcacggcggtttcgagacaccacaagattgta 27782516  T
Q  117 aggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacga 216  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782515 aggaaccttctgcctctaatcaaagtattgatgagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacga 27782416  T
Q  217 gcttccaagtaatgatgtgatgaattttgagcttccatgtgatga 261  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  27782415 gcttccaagtaatgatgtgatgaattttgagctttcaagtgatga 27782371  T

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Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 27780947 - 27781092
Alignment:
Q  101 acaccacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaaga 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  27780947 acaccacaatattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagattaatgaaggtgaaacaaaattagggtcaaaagttgtgaaga 27781046  T
Q  201 attttgatttgaacgagcttccaagtaatgatgtgatgaattttga 246  Q
    ||||||||||| |||||||||||||| ||||| ||| |||||||||    
T  27781047 attttgatttggacgagcttccaagtgatgatatgaagaattttga 27781092  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 38227300 - 38227213
Alignment:
Q  142 tattgaagagaagaagatga---atgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 226  Q
    ||||||||||||||||| ||   ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38227300 tattgaagagaagaagacgattaatgaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagt 38227213  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 38227206 - 38227135
Alignment:
Q  161 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 232  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  38227206 aatgaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 38227062 - 38226992
Alignment:
Q  161 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatga 231  Q
    |||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  38227062 aatgaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatga 38226992  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 38227134 - 38227063
Alignment:
Q  161 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 232  Q
    |||||||||||| | ||| |||||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  38227134 aatgaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgat 38227063  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 27781156 - 27781209
Alignment:
Q  193 tgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga 246  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  27781156 tgtgaagaattttgatttgaacaagcttccaagtgatgatgtgaagaattttga 27781209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 27781080 - 27781131
Alignment:
Q  195 tgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga 246  Q
    |||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  27781080 tgaagaattttgatttgaacgagcttccaagtgatgatgcgaagaattttga 27781131  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 17663550 - 17663618
Alignment:
Q  164 gaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 232  Q
    |||| |||||| ||| ||||||||| |||||| | ||||||||||||||| |||||||||||| |||||    
T  17663550 gaagatgaaaccgaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgat 17663618  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 27781195 - 27781248
Alignment:
Q  193 tgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga 246  Q
    |||||||||||||||||||||||||  ||||| | ||||||||| |||||||||    
T  27781195 tgtgaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttga 27781248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 17700424 - 17700361
Alignment:
Q  169 tgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 232  Q
    |||||| ||| ||||||||| |||||| | |||| |||||||||| |||||||||||| |||||    
T  17700424 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgat 17700361  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 27781120 - 27781170
Alignment:
Q  196 gaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga 246  Q
    ||||||||||||||||||||||  ||||| | ||||||||| |||||||||    
T  27781120 gaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttga 27781170  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 21079010 - 21079047
Alignment:
Q  187 aaaagttgtgaagaattttgatttgaacgagcttccaa 224  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  21079010 aaaagttgttaggaattttgatttgaacgagcttccaa 21079047  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 441055 - 440929
Alignment:
Q  105 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattt 204  Q
    |||||||||||||||||||| || ||||||||||  ||||||||||||||| ||| ||||||||||  || ||| ||||| |||||||||||||||||||    
T  441055 cacaagattgcaaggaacctcctacctctaatcatggtattgaagagaagatgattaatgaaggtgttactgaattagggccaaaagttgtgaagaattt 440956  T
Q  205 tgatttgaacgagcttccaagtaatga 231  Q
    |||||||||||||||||||||| ||||    
T  440955 tgatttgaacgagcttccaagtgatga 440929  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 35250265 - 35250178
Alignment:
Q  145 tgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 232  Q
    ||||||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35250265 tgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgat 35250178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 51220161 - 51220034
Alignment:
Q  105 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattt 204  Q
    |||||||||||||||||| ||   |||||||| |   |||||||||||||||||| || ||| ||||||| ||| ||||||||| |||||| | ||||||    
T  51220161 cacaagattgcaaggaacatgactcctctaataatgatattgaagagaagaagattaacgaaagtgaaactgaattagggtcaatagttgttatgaattt 51220062  T
Q  205 tgatttgaacgagcttccaagtaatgat 232  Q
    ||||| ||| |||||||||||| |||||    
T  51220061 tgattcgaatgagcttccaagtgatgat 51220034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 51220911 - 51220827
Alignment:
Q  142 tattgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 226  Q
    |||||||||||||||||| || ||| ||||||| ||| ||||||||| | |||| | ||||||||| ||||||||||||||||||    
T  51220911 tattgaagagaagaagattaacgaaagtgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagt 51220827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 51220427 - 51220459
Alignment:
Q  142 tattgaagagaagaagatgaatgaaggtgaaac 174  Q
    |||||||||||||||||| ||||||||||||||    
T  51220427 tattgaagagaagaagattaatgaaggtgaaac 51220459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 44989837 - 44989768
Alignment:
Q  105 cacaagattgcaaggaacctgctgcctctaatcaaagtattgaagagaagaagatgaatgaaggtgaaac 174  Q
    |||||||||||||||||||||  | |||||||||   ||||||| |||||||||| || |||||||||||    
T  44989837 cacaagattgcaaggaacctgaaggctctaatcatgatattgaatagaagaagattaacgaaggtgaaac 44989768  T

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