View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14315_low_40 (Length: 259)
Name: NF14315_low_40
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 47350625 - 47350751
Alignment:
| Q |
17 |
acaaactgtgaccttcaactaaaacaatgttggaagagagtggtttcttcaagagccatcatactaacttcagctaagcgtagctcatgaatcccagctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350625 |
acaaactgtgaccttcaactaaaacaatgttggaagagagtggtttcttcaagagccatcatactaacttcagctaagcgtagctcatgaatcccagctc |
47350724 |
T |
|
| Q |
117 |
caatgaaaatgcctttcattctcagct |
143 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
47350725 |
caatgaaaatgcctttcattctcagct |
47350751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 47350987 - 47351071
Alignment:
| Q |
175 |
caaaagatatcaaccaacactcacataagaatttgattcaacaaaaacaattctagtagttatacataataactagagatcaatt |
259 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47350987 |
caaaaaatatcaaacaagactcacataagaatttgatccaacaaaaacaattttagtagttatacataataactagagatcaatt |
47351071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University