View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_43 (Length: 246)
Name: NF14315_low_43
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 38626253 - 38626477
Alignment:
| Q |
8 |
agcataggatagcaatgatgtacttaactcatgggcagcaaacttggagaagctgcttgatcttgtggagaagaactgtcatcaaatacacaaggaaacc |
107 |
Q |
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| T |
38626253 |
agcaaaggatagcaatgatgtacttaactcatgggcagcaaacttggagaagctgcttgatcttgtggagaagagctgtcatcaaatacacaaggaaacc |
38626352 |
T |
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| Q |
108 |
atggtccataaagcagctttgaaggtttaagaaggtaggtccatatattggttcctttctcaaattttctcactgttgtgtttagagagattttctcaat |
207 |
Q |
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| T |
38626353 |
atggtccataaagcagctttgaaggtttaagaaggtaggtccatatattggctcctttctcaaattttctcactgttgtgtttagagagattttctcaat |
38626452 |
T |
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| Q |
208 |
ggaagtatgtgatttatgaagaatg |
232 |
Q |
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| T |
38626453 |
ggaagtatgtgatttatgaagaatg |
38626477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 38651286 - 38651513
Alignment:
| Q |
8 |
agcataggatagcaatgatgtacttaactcatgggcagcaaacttggagaagctgcttgatcttgtggagaagaactgtcatcaaatacacaaggaaacc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38651286 |
agcaaaggatagcaatgatgtacttaactcatgggcagcaaacttggagaagctgcttgatcttgtggagaagagctgtcatcaaatacacaaggaaacc |
38651385 |
T |
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| Q |
108 |
atggtccataaagcagctttgaaggtttaagaaggtaggtccatatattggttcctttctcaaattttctcactgttgtgtttagagagattttctcaat |
207 |
Q |
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| T |
38651386 |
atggtccataaagcagctttgaaggtttaagaaggtaggtccatatattggctcctttctcaaattttctcactgttgtgtttagagagattttctcgat |
38651485 |
T |
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| Q |
208 |
g---gaagtatgtgatttatgaagaatg |
232 |
Q |
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| T |
38651486 |
ggaagaagtatgtgatttatgaagaatg |
38651513 |
T |
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