View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_44 (Length: 242)
Name: NF14315_low_44
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11776557 - 11776628
Alignment:
| Q |
1 |
taaaccatggcggcagaacaagcattcaatccttctgaatcggaaaatcactgttgcgctgaggtatgctat |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11776557 |
taaaccatggcggcagaacaagcattcaatccttctgaatcggaaaatcactgttgcgctgaggtatgctat |
11776628 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 11776715 - 11776783
Alignment:
| Q |
159 |
agttgaagaaaaagtattccaagcttcaagaatcacgaaatgctctacgtgaagctgttaggttacttg |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11776715 |
agttgaagaaaaagtattccaagcttcaagaatcacgaaatgctctacgtgaagctgttaggttacttg |
11776783 |
T |
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