View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_47 (Length: 238)
Name: NF14315_low_47
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_47 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 35696936 - 35696722
Alignment:
| Q |
20 |
gaaatattttttcaaattttaaagcaaaaattagtttatttacaaggactaaatcatatttcaatnnnnnnnnn-gagactatgtaaattaaagttactt |
118 |
Q |
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| T |
35696936 |
gaaatatttttccaaattttaaagcaaaaattagtttatttacaaggactaaatcatatttcaataaaaaaaaaagagactatgtaaa-----gttactt |
35696842 |
T |
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| Q |
119 |
tgaaatctcttgaaacaacatcgaaataagcatttggtgatgtaatatcatcaaagtagaggattggagcagatgaggccaaagcaccaatggccaagtg |
218 |
Q |
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| T |
35696841 |
tgaaatctcttgaaacaacatcgaaataagcatttggtgatgtaatatcatcaaagtagaggattggagcagatgaggccaaagcaccaatggccaagtg |
35696742 |
T |
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| Q |
219 |
aggatatttgagcctaaacc |
238 |
Q |
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| T |
35696741 |
aggatatttgagcctaaacc |
35696722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 32478544 - 32478430
Alignment:
| Q |
113 |
ttactttgaaatctcttgaaacaacatcgaaataagcatttggtgatgtaatatcatcaaagtagaggattggagcagatgaggccaaagcaccaatggc |
212 |
Q |
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| T |
32478544 |
ttactttgaaatcccttgaaacaatatccatatatccatttggttggatatggtcatcaacatataggattggagcagatgaggccaaaacaccaatggc |
32478445 |
T |
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| Q |
213 |
caagtgaggatattt |
227 |
Q |
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| T |
32478444 |
caagtgaggatattt |
32478430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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