View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14315_low_48 (Length: 233)
Name: NF14315_low_48
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14315_low_48 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 25690381 - 25690168
Alignment:
| Q |
22 |
gtgtcaaacccttagaagaccccgttcttagaaagattgaactgtatnnnnnnngagaactcaacttatatgaccgagtagtttaacataaaactcagat |
121 |
Q |
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| T |
25690381 |
gtgtcaaacccttagaagaccacgtttataggaagattgcaatgtataaaaatagagaactcaaattatatgaaccggacgtttaacatacaactcagat |
25690282 |
T |
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| Q |
122 |
tatatttgccaaactgtgt--cagcacacaaaggcagaatcttttgttcactgcttaaaacctctttgtcattcattcaattgattttattttataatag |
219 |
Q |
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| T |
25690281 |
tatatttgccaaactgtgtgtcagcacacagaggcagaatcttttgttcactacttaaaacctctttgtcattcattcaattgattttattttataatag |
25690182 |
T |
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| Q |
220 |
atgatcacaatgaa |
233 |
Q |
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|||||||||||||| |
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| T |
25690181 |
atgatcacaatgaa |
25690168 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 5588635 - 5588690
Alignment:
| Q |
177 |
aaacctctttgtcattcattcaattgattttattttataatagatgatcacaatgaa |
233 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5588635 |
aaacctctctgtcattcattcaattgattttattttataata-atgatcacaatgaa |
5588690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 48696800 - 48696835
Alignment:
| Q |
198 |
aattgattttattttataatagatgatcacaatgaa |
233 |
Q |
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| T |
48696800 |
aattgattttattttataatagatgatcacaatgaa |
48696835 |
T |
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