View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_5 (Length: 589)

Name: NF14315_low_5
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_5
NF14315_low_5
[»] chr8 (15 HSPs)
chr8 (109-573)||(31456364-31456827)
chr8 (13-108)||(4350769-4350864)
chr8 (14-108)||(34141960-34142054)
chr8 (17-75)||(9191169-9191227)
chr8 (19-108)||(22486699-22486787)
chr8 (14-75)||(26835693-26835754)
chr8 (13-69)||(13580456-13580512)
chr8 (15-70)||(38075786-38075840)
chr8 (14-108)||(22930257-22930351)
chr8 (13-65)||(7255379-7255431)
chr8 (14-69)||(28376631-28376687)
chr8 (14-107)||(13236100-13236194)
chr8 (25-82)||(21348504-21348561)
chr8 (131-187)||(23979070-23979126)
chr8 (19-59)||(43872463-43872503)
[»] chr4 (13 HSPs)
chr4 (14-112)||(23869979-23870077)
chr4 (16-104)||(55236220-55236309)
chr4 (14-106)||(3643244-3643334)
chr4 (14-109)||(29118406-29118501)
chr4 (14-83)||(6137165-6137234)
chr4 (15-57)||(7540513-7540555)
chr4 (10-73)||(12320374-12320438)
chr4 (14-109)||(7853230-7853325)
chr4 (14-105)||(36071656-36071747)
chr4 (13-57)||(25790450-25790494)
chr4 (16-56)||(35372204-35372243)
chr4 (13-57)||(47059677-47059721)
chr4 (13-57)||(47082081-47082125)
[»] chr1 (15 HSPs)
chr1 (14-105)||(1240366-1240457)
chr1 (14-109)||(23897994-23898089)
chr1 (206-274)||(49084530-49084598)
chr1 (14-108)||(23935124-23935218)
chr1 (21-83)||(35405285-35405346)
chr1 (15-107)||(10976216-10976308)
chr1 (14-108)||(8246819-8246911)
chr1 (19-105)||(22667683-22667769)
chr1 (13-106)||(45385334-45385427)
chr1 (17-107)||(34299057-34299147)
chr1 (13-47)||(35204313-35204347)
chr1 (13-94)||(1153822-1153903)
chr1 (17-81)||(40869-40933)
chr1 (13-105)||(3265563-3265655)
chr1 (14-70)||(29664165-29664221)
[»] chr7 (11 HSPs)
chr7 (14-108)||(15134550-15134644)
chr7 (17-82)||(30095862-30095927)
chr7 (25-108)||(21828097-21828180)
chr7 (14-69)||(35812589-35812644)
chr7 (17-69)||(21292832-21292884)
chr7 (13-63)||(26914441-26914490)
chr7 (10-70)||(3940746-3940806)
chr7 (21-57)||(36066100-36066136)
chr7 (14-57)||(49164865-49164908)
chr7 (13-103)||(40351866-40351956)
chr7 (17-57)||(37996496-37996536)
[»] chr6 (8 HSPs)
chr6 (13-94)||(10668976-10669057)
chr6 (14-107)||(12174257-12174350)
chr6 (19-94)||(13229257-13229332)
chr6 (17-109)||(35122053-35122145)
chr6 (17-80)||(33344760-33344823)
chr6 (18-57)||(34969383-34969422)
chr6 (14-68)||(4337990-4338044)
chr6 (17-57)||(13481670-13481710)
[»] chr2 (9 HSPs)
chr2 (23-106)||(16647942-16648025)
chr2 (17-108)||(37911368-37911459)
chr2 (14-108)||(5163728-5163822)
chr2 (14-84)||(34909438-34909508)
chr2 (10-75)||(17271358-17271423)
chr2 (14-74)||(4206661-4206720)
chr2 (16-64)||(34345878-34345926)
chr2 (13-57)||(40877023-40877067)
chr2 (14-44)||(28556704-28556734)
[»] chr5 (8 HSPs)
chr5 (14-75)||(7887286-7887347)
chr5 (14-107)||(20870571-20870664)
chr5 (14-108)||(3193621-3193715)
chr5 (12-108)||(18600128-18600224)
chr5 (14-75)||(39542379-39542440)
chr5 (14-66)||(12263747-12263799)
chr5 (13-57)||(32257783-32257827)
chr5 (33-109)||(23922444-23922520)
[»] chr3 (9 HSPs)
chr3 (17-108)||(15670854-15670945)
chr3 (14-109)||(11383527-11383621)
chr3 (15-69)||(33510197-33510252)
chr3 (15-57)||(54417122-54417164)
chr3 (14-57)||(27541167-27541210)
chr3 (19-108)||(52706765-52706854)
chr3 (15-47)||(17713273-17713305)
chr3 (13-53)||(18257984-18258024)
chr3 (15-47)||(19014502-19014534)
[»] scaffold0777 (1 HSPs)
scaffold0777 (14-105)||(5785-5875)
[»] scaffold0001 (1 HSPs)
scaffold0001 (14-109)||(64974-65067)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 109 - 573
Target Start/End: Complemental strand, 31456827 - 31456364
Alignment:
Q  109 catgtaacctctttatctgatctaaaaattaattggagaagaaaaaactacagattttagttttaagttagaaccaattcttcgattatacttaagaaca 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31456827 catgtaacctctttatgtgatctaaaaattaattggagaagaaaaaactaaagattttagttttaagttagaaccaattcttggattatacttaagaaca 31456728  T
Q  209 ttcaaaactagaaacaattttagttcttccacaatagaaccaaacatacgtgtatatagtgtatcatataatctctctctaagaaactcattcctgatga 308  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  31456727 ttcaaaactagaaacaattttagttcttctacaatagaaccaaacatacgtgtatatagtgtatcatataatctctctc----------attcctgatga 31456638  T
Q  309 agtaaggacaattagactgcaaaccaatattttgatatgactcgtctgattagctaatttatatgtacaatcattttcttctctaaagatgtgactgcat 408  Q
    |||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31456637 agtaaggacaattagactacaaaccaatattttgatatgactc---tgattagctaatttatatgtacaatcattctcttctctaaagatgtgactgcat 31456541  T
Q  409 ttaaaatgaatcactttggtaaagaggttgcaattgttccatttattccttatactccaagaaacaatattgtcacttgaaaaggttgtaattgc----- 503  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |         
T  31456540 ttaaaatgaatcactttggtaaagagggtgcaactgttccatttattccttatactccaagaaacaat-ttgtcacttgaaaaggttgtaattacaactt 31456442  T
Q  504 --------gattctatccaaagtttggtccaaccttcattcttggcgtgctcaattgcatttatttttgcagcaaatt 573  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31456441 gagaatatgattctatccaaagtttggtccaaccttcattcttggcgtgctcaattgcagttatttttgcagcaaatt 31456364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 4350769 - 4350864
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||||||||||||| ||||||||||||||||| || | |||||||  |||||||| ||||| | |||||||  ||||||||| |||||||||||||    
T  4350769 atactaactactaaataaaaataataattttggtgcctctaaaaaagtggtgcccagggctaccgcccctcgtgcccgccctcagggccacccctg 4350864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 34142054 - 34141960
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||||||||||| ||||||||||| ||||| || |||||| ||  |||||||||||||||| || ||||  ||| ||||| |||||||||||||    
T  34142054 tactaactactaaataaaaataatagttttggtgcccctaacaaagtggtgccctgggctgccgctcctcgcgcctgccctcagggccacccctg 34141960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 9191227 - 9191169
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgc 75  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||||  |||||||||    
T  9191227 taactactaagtaaaaataataattttgatgctcctaaaaaaatggtgttctgggctgc 9191169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 22486699 - 22486787
Alignment:
Q  19 actactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||||||||||| ||||||||||||| |  ||||||||| ||| ||||||||||||| |||||||   || ||||| |||||||||||||    
T  22486699 actactaagtaagaataataattttggta-ccctaaaaaaatgatgccctgggctgccgcccctcgcacctgccctcagggccacccctg 22486787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 26835693 - 26835754
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgc 75  Q
    ||||||||| ||||||||||||||||||||| || ||||||||| |||||||  ||||||||    
T  26835693 tactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtgctatgggctgc 26835754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 13580456 - 13580512
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctg 69  Q
    |||||||||| ||||||||||||||||||||| || ||||||||| |||||| ||||    
T  13580456 atactaactattaagtaaaaataataattttggtgcccctaaaaaaatggtgtcctg 13580512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 38075786 - 38075840
Alignment:
Q  15 actaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgg 70  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  38075786 actaacaactaagtaaaaataataattttgatgtccctaaaaa-atggtgtcctgg 38075840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 22930351 - 22930257
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||||||| ||||||||||| ||||||||| || |||| |||| |||||||||||| |||  ||||||   ||||||||| ||| | |||||||    
T  22930351 tactaactattaagtaaaaattataattttggtgcccctgaaaaaatggtgccctggactgtcgccccttgcgcccgccctcaggacaacccctg 22930257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 7255431 - 7255379
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgc 65  Q
    |||||||| |||||||||||||| ||||||| ||| || ||||||||||||||    
T  7255431 atactaaccactaagtaaaaatattaattttaatgcccttaaaaatatggtgc 7255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 28376687 - 28376631
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccct-aaaaatatggtgccctg 69  Q
    ||||||||||||||||||||||||||||||| || | || ||||| |||||||||||    
T  28376687 tactaactactaagtaaaaataataattttggtgccgctaaaaaaaatggtgccctg 28376631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 13236194 - 13236100
Alignment:
Q  14 tactaactactaagtaaaaa-taataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccct 107  Q
    |||||||||||||||||||| ||||||||||| || |||| |||  |||||||||| || ||  |||||||| |||| |||| ||| || |||||    
T  13236194 tactaactactaagtaaaaaataataattttggtgccccttaaacaatggtgccctaggttgtcgcccctcctgcccaccctcaggacctcccct 13236100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 21348504 - 21348561
Alignment:
Q  25 aagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccct 82  Q
    |||||||||||| ||||||  || ||||| ||| ||||||||||||||||| ||||||    
T  21348504 aagtaaaaataagaattttagtgcccctacaaaaatggtgccctgggctgccgcccct 21348561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 23979070 - 23979126
Alignment:
Q  131 taaaaattaattggagaagaaaaaactacagattttagttttaagttagaaccaatt 187  Q
    ||||||||||||| ||||  |||  ||||||||||||||||||||||| || |||||    
T  23979070 taaaaattaattgtagaatcaaatgctacagattttagttttaagttataatcaatt 23979126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 43872503 - 43872463
Alignment:
Q  19 actactaagtaaaaataataattttgatggccctaaaaata 59  Q
    |||||||||||||||||||||| | |||| |||||||||||    
T  43872503 actactaagtaaaaataataatatggatgcccctaaaaata 43872463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 23870077 - 23869979
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgcatg 112  Q
    ||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||||  |||||||  ||||||||| |||||||||||||||||    
T  23870077 tactaactactaagtaaaaataataattttggtgcccctaaaaaagtggtgccctgggctgtcgcccctcgagcccgccctcagggccacccctgcatg 23869979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 55236309 - 55236220
Alignment:
Q  16 ctaactactaagtaaaaataataattttgatggccct-aaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacc 104  Q
    ||||||||||| |||||||||||||||||||| || | ||||| |||||| ||||||||||||||||||  ||||||||| | |||||||    
T  55236309 ctaactactaaataaaaataataattttgatgcccttaaaaaaaatggtgtcctgggctgctgcccctcgcgcccgccctcaaggccacc 55236220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 3643244 - 3643334
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccc 106  Q
    ||||||||||||||||||| |||||||||||||| || |||||| |||||||| |||||| | |||||||| |||| |||| |||||||||||    
T  3643244 tactaactactaagtaaaa-taataattttgatgtccttaaaaa-atggtgccatgggctaccgcccctcctgcccaccctcagggccacccc 3643334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 29118501 - 29118406
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    ||||||||||||  ||||||||||||||||| || ||| | ||| ||||||||||| ||| |  ||||||  ||||||||| ||||||||||||||    
T  29118501 tactaactactacataaaaataataattttggtgccccaataaaaatggtgccctgagctcccacccctcgagcccgccctcagggccacccctgc 29118406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 6137234 - 6137165
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctc 83  Q
    ||||||||||||| |||||||||||||||| |||  |||||||| |||||| ||||| |||| |||||||    
T  6137234 tactaactactaaataaaaataataattttaatgctcctaaaaaaatggtgtcctggactgccgcccctc 6137165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 7540513 - 7540555
Alignment:
Q  15 actaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  7540513 actaactaataagtaaaaataataattttgatgcccctaaaaa 7540555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 12320438 - 12320374
Alignment:
Q  10 attatactaactactaagtaaaaa-taataattttgatggccctaaaaatatggtgccctgggct 73  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||  |||||| | ||||||    
T  12320438 attatactaactactaagtaaaaagtaataattttcatgcccctaaaataatggtgtcatgggct 12320374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 7853325 - 7853230
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    |||||||||||||||||||||||||| |||| || |  ||| |  ||| |||||| || ||| ||| |||| |||| |||| ||||||||||||||    
T  7853325 tactaactactaagtaaaaataataaatttggtgcctgtaagataatgatgccctaggttgccgcctctcccgcccacccttagggccacccctgc 7853230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 36071656 - 36071747
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccaccc 105  Q
    |||||||||  |||||||||||||||||||  || ||||| ||| |||||  ||||| |||| |||||||| |||| ||||  |||||||||    
T  36071656 tactaactatcaagtaaaaataataattttagtgcccctagaaaaatggtaacctggactgccgcccctcccgcccaccctttgggccaccc 36071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 25790494 - 25790450
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||||| ||| ||||||||||||||||| || |||||||||    
T  25790494 atactaactattaaataaaaataataattttggtgcccctaaaaa 25790450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 35372204 - 35372243
Alignment:
Q  16 ctaactactaagtaaaaataataattttgatggccctaaaa 56  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  35372204 ctaactactaagtaaaaataataa-tttgatgtccctaaaa 35372243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 47059721 - 47059677
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||    
T  47059721 atactaactaataagtaaaaataataattttggtgccccttaaaa 47059677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 47082081 - 47082125
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||    
T  47082081 atactaactaataagtaaaaataataattttggtgccccttaaaa 47082125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 1240457 - 1240366
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccaccc 105  Q
    ||||||||||||||||||||||||||||||  || ||||||||| |||||| |||||||||| ||||||||  |||||||| ||||||||||    
T  1240457 tactaactactaagtaaaaataataattttagtgcccctaaaaaaatggtgtcctgggctgccgcccctccatcccgccctcagggccaccc 1240366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 23897994 - 23898089
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    ||||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||||||||| |||||||  |||| |||| ||||||||||||||    
T  23897994 tactaactactaagtaaaaatgataattttggtgcccctaaaaaaatggttccctgggctgccgcccctcaagcccaccctcagggccacccctgc 23898089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 49084598 - 49084530
Alignment:
Q  206 acattcaaaactagaaacaattttagttcttccacaatagaaccaaacatacgtgtatatagtgtatca 274  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||    
T  49084598 acattcaaaactagaaacaattttagctcctccacagtagaaccaaacatacgtgtatatagtgcatca 49084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 23935218 - 23935124
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||||||||||||||||||||  |||||||| || ||||||||| ||||||||||||||||| |||||||  |||| || | |||||||||||||    
T  23935218 tactaactactaagtaaaaatgttaattttggtgaccctaaaaaaatggtgccctgggctgccgcccctcaagcccaccttcagggccacccctg 23935124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 35405346 - 35405285
Alignment:
Q  21 tactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctc 83  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||    
T  35405346 tactaagtaaaaataataattttggtgcccctaaaaa-atggtgccctgggctgccgcccctc 35405285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 10976216 - 10976308
Alignment:
Q  15 actaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccct 107  Q
    |||||| ||||| ||||| |||||||||||||| ||||||||| |||||||| ||| |||| ||||| || |||| |||| ||||||| ||||    
T  10976216 actaaccactaaataaaactaataattttgatgcccctaaaaaaatggtgccttggactgccgccccgcccgcccaccctcagggccatccct 10976308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 8246819 - 8246911
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||||||| ||||||||||||||||||||| ||  |||||||| |||||||||||  |||| |||||| | |||| |||  |||||||||||||    
T  8246819 tactaactattaagtaaaaataataattttggtg--cctaaaaaaatggtgccctgaactgccgccccttccgcccacccgcagggccacccctg 8246911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 22667683 - 22667769
Alignment:
Q  19 actactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccaccc 105  Q
    |||||||| ||||||||||||||||  || ||||||| | |||||||||| |||||| |||||||   |||||||| || |||||||    
T  22667683 actactaaataaaaataataatttttgtgcccctaaataaatggtgccctaggctgccgcccctcaaacccgccctcagagccaccc 22667769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 45385334 - 45385427
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccc 106  Q
    |||| ||||||||| |||||||||||||||||||  |||| | || |||||| ||| ||||||  || |||| |||| |||| |||||||||||    
T  45385334 atacaaactactaaataaaaataataattttgataccccttataaaatggtgtcctaggctgccacctctcccgcccaccctcagggccacccc 45385427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 34299057 - 34299147
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccct 107  Q
    ||||||||||| |||||||| ||||||  || || |||||  |||||| |||||||||| |||||||  |||| |||| |||| |||||||    
T  34299057 taactactaaggaaaaataacaattttagtgcccttaaaagaatggtgtcctgggctgccgcccctcgagcccaccctcagggtcacccct 34299147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 35204313 - 35204347
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatg 47  Q
    ||||||| |||||||||||||||||||||||||||    
T  35204313 atactaattactaagtaaaaataataattttgatg 35204347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 1153822 - 1153903
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccct 94  Q
    |||||||||||||| |||||||||||||| || || |||  |||| |||||| |||| ||| | |||||||| | |||||||    
T  1153822 atactaactactaaataaaaataataattgtggtgccccctaaaagatggtgtcctgagctaccgcccctcccgtccgccct 1153903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 40869 - 40933
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccc 81  Q
    ||||||| |||||||||||||||||||| || |||||| || |||||| | ||||| || |||||    
T  40869 taactacaaagtaaaaataataattttggtgcccctaataaaatggtgtcttgggcggccgcccc 40933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 3265563 - 3265655
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccaccc 105  Q
    |||||||||| ||||||||||||||||||||| |  || | | || ||||||||||| ||||| |  ||||| |||  |||| ||||||||||    
T  3265563 atactaactattaagtaaaaataataattttggttccctttataaaatggtgccctgtgctgcagttcctcccgcctaccctcagggccaccc 3265655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 29664221 - 29664165
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgg 70  Q
    |||||| |||||||||||||||||||||||  |  ||||||||| |||||| |||||    
T  29664221 tactaattactaagtaaaaataataattttagtatccctaaaaaaatggtgtcctgg 29664165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 15134550 - 15134644
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||| ||||||||||||||||||||||||| || |||||||||| || ||||||||||||| ||||||   ||||||||| |||||||||||||    
T  15134550 tactagctactaagtaaaaataataattttggtgcccctaaaaatttgatgccctgggctgccgccccttaagcccgccctcagggccacccctg 15134644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30095862 - 30095927
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccct 82  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| ||||||    
T  30095862 taactactaagtaaaaataataattttggtgcccctaaaaaaatggtgccctgggctgccgcccct 30095927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 21828180 - 21828097
Alignment:
Q  25 aagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||||||||||||||||| ||| ||||||| | ||||||||||||||||| |||||||  |||| |||| |||||||||||||    
T  21828180 aagtaaaaataataatttttatgcccctaaagaaatggtgccctgggctgcagcccctcgcgccctccctcagggccacccctg 21828097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 35812644 - 35812589
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctg 69  Q
    |||||| || |||||||||||||||||||||||| ||||||||| |||||||||||    
T  35812644 tactaattattaagtaaaaataataattttgatgcccctaaaaaaatggtgccctg 35812589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 21292832 - 21292884
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctg 69  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||    
T  21292832 taactactaagtaaaaataataattttggtgcccctaaaaagacggtgccctg 21292884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 26914441 - 26914490
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggt 63  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  26914441 atactaactactaagtaaaaataataattttgat-accctaaaaaaatggt 26914490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 3940746 - 3940806
Alignment:
Q  10 attatactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgg 70  Q
    |||||||| |||||||||||||||||||||||| ||||  | |||||| ||| ||||||||    
T  3940746 attatacttactactaagtaaaaataataatttggatgcgcttaaaaaaatgatgccctgg 3940806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36066136 - 36066100
Alignment:
Q  21 tactaagtaaaaataataattttgatggccctaaaaa 57  Q
    ||||||||||||||||||||||||||| |||||||||    
T  36066136 tactaagtaaaaataataattttgatgaccctaaaaa 36066100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 49164865 - 49164908
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||||||||||||||||||||||| ||||| || ||||||    
T  49164865 tactaactactaagtaaaaataataattatgatgcccttaaaaa 49164908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 40351866 - 40351956
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccac 103  Q
    |||||||||||| |||||||||||||| |||| || || |||||  || || ||||||||| | ||||||||  ||| |||| ||||||||    
T  40351866 atactaactactgagtaaaaataataactttggtgcccttaaaataattgtaccctgggcttccgcccctccctcccaccctcagggccac 40351956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 37996536 - 37996496
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||||||||||||||||||||||| || || ||||||    
T  37996536 taactactaagtaaaaataataattttggtgcccataaaaa 37996496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 10668976 - 10669057
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccct 94  Q
    |||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||| |||| ||||    
T  10668976 atactaactaataagtaaaaataataattttggtgcccctaaaaaaatggtgccctggactgctgcccctcccgcccaccct 10669057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 12174350 - 12174257
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccct 107  Q
    ||||||||||||||||||||||||||||||| || | || |||| |||||||||| || | |||||||||| ||| ||||| ||||||||||||    
T  12174350 tactaactactaagtaaaaataataattttggtgcctcttaaaaaatggtgccctaggttactgcccctcctgcctgccctcagggccacccct 12174257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 13229332 - 13229257
Alignment:
Q  19 actactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccct 94  Q
    |||||||||||||||||||||||||| || | ||||||| |||||||| |||||||| |||||||| |||||||||    
T  13229332 actactaagtaaaaataataattttggtgcctctaaaaaaatggtgccttgggctgccgcccctcctgcccgccct 13229257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 35122053 - 35122145
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    |||||||||||||||||||||||||||| || ||||||  | |||||||| || ||||| |||||||  ||||||||| ||||| ||||||||    
T  35122053 taactactaagtaaaaataataattttggtgcccctaattaaatggtgccttgtgctgccgcccctcaagcccgccctcagggctacccctgc 35122145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 33344823 - 33344760
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgccc 80  Q
    |||||||||||||||||||||||||||| || ||||||  | |||||||| |||||||| ||||    
T  33344823 taactactaagtaaaaataataattttggtgcccctaattaaatggtgccttgggctgccgccc 33344760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 34969422 - 34969383
Alignment:
Q  18 aactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  34969422 aactactaagtaaaaataataattttgatgcccttaaaaa 34969383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 4337990 - 4338044
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccct 68  Q
    ||||||||||||||||||| ||||||||||| || || |||||  ||||||||||    
T  4337990 tactaactactaagtaaaagtaataattttggtgcccataaaataatggtgccct 4338044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 13481670 - 13481710
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    ||||||||| | ||||||||||||||||||| |||||||||    
T  13481670 taactactacggaaaaataataattttgatgcccctaaaaa 13481710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 16647942 - 16648025
Alignment:
Q  23 ctaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccc 106  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||||  ||||||||| | |||||||||    
T  16647942 ctaaataaaaataataattttgatgcccctaaaaaaatggtgccctgggttgccgcccctcgtgcccgccctcacggccacccc 16648025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 37911459 - 37911368
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||||||||| |||||||||||||||| || ||||||| | |||||| |||||||||| |||||||  | |||| || |||||||||||||    
T  37911459 taactactaagcaaaaataataattttggtgcccctaaataaatggtgtcctgggctgccgcccctcaaggccgcgctcagggccacccctg 37911368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 5163822 - 5163728
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||  || ||||||| |||||  | |||||| |||| ||||  || |||||||||    
T  5163822 tactaactactaagtaaaaataataattttgatgcccctaaaataatagtgccctaggctgtcgtccctcccgcccaccctctggaccacccctg 5163728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 34909438 - 34909508
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctcc 84  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||  ||||| ||||||||||| | ||||||    
T  34909438 tactaactagtaagtaaaaataataattttaatgcccctaaaataatggtaccctgggctgccgtccctcc 34909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 17271358 - 17271423
Alignment:
Q  10 attatactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgc 75  Q
    |||||||| |||||||||||||||||||||||||| |  ||||||||| || | ||||||||||||    
T  17271358 attatactgactactaagtaaaaataataattttggtacccctaaaaaaatagcgccctgggctgc 17271423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 4206661 - 4206720
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctg 74  Q
    |||||||||||||||||| |||||||||||| || ||||||||| ||||||  ||||||||    
T  4206661 tactaactactaagtaaatataataattttggtgcccctaaaaa-atggtgttctgggctg 4206720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 34345926 - 34345878
Alignment:
Q  16 ctaactactaagtaaaaataataattttgatggccctaaaaatatggtg 64  Q
    |||||||||||||||||||||||||||||||  |||| ||| |||||||    
T  34345926 ctaactactaagtaaaaataataattttgattcccctcaaattatggtg 34345878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 40877023 - 40877067
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    ||||||||||| |||||||||||||||||||| || |||||||||    
T  40877023 atactaactaccaagtaaaaataataattttggtgtccctaaaaa 40877067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 28556704 - 28556734
Alignment:
Q  14 tactaactactaagtaaaaataataattttg 44  Q
    |||||||||||||||||||||||||||||||    
T  28556704 tactaactactaagtaaaaataataattttg 28556734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 7887286 - 7887347
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgc 75  Q
    ||||||||||||||||||||||||||||||| || |||||||   |||||||||||||||||    
T  7887286 tactaactactaagtaaaaataataattttggtgcccctaaaccaatggtgccctgggctgc 7887347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 20870664 - 20870571
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccct 107  Q
    ||||||||||||| |||||||||||||||||||   | |||||| ||||||||||  ||||| |||  ||  ||||||||||||||||||||||    
T  20870664 tactaactactaaataaaaataataattttgatactcttaaaaaaatggtgccctaagctgccgcctatcaagcccgccctgagggccacccct 20870571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 3193621 - 3193715
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    ||||| ||||||  ||||||||||||||||| || || ||  || ||||||||||||||| | |||||||  ||||||||| |||||||||||||    
T  3193621 tactacctactacataaaaataataattttggtgcccttatgaaaatggtgccctgggctcccgcccctcgagcccgccctcagggccacccctg 3193715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 18600224 - 18600128
Alignment:
Q  12 tatactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||| |||||||||  |||||||||||||||||||| ||||| |||  |||||||||||||  | ||| |||| |||| |||| ||||| |||||||    
T  18600224 tataataactactatataaaaataataattttgatgcccctataaaattggtgccctgggccaccgcctctcccgcccaccctcagggctacccctg 18600128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 39542440 - 39542379
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgc 75  Q
    |||||||||||| ||||||||||||||||||||| ||||  ||| |||||||  ||||||||    
T  39542440 tactaactactacgtaaaaataataattttgatgcccctgtaaaaatggtgctatgggctgc 39542379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 12263747 - 12263799
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgcc 66  Q
    ||||||| | ||||||||||||||||||||| || ||||||||| ||||||||    
T  12263747 tactaaccattaagtaaaaataataattttggtgcccctaaaaaaatggtgcc 12263799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 32257783 - 32257827
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||    
T  32257783 atactaactactaagtaaaaataattattttgatgctcctaaaaa 32257827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 23922444 - 23922520
Alignment:
Q  33 ataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    ||||||||||||||| ||||||| | ||||||  ||||| || | || |||  ||||||||| ||||||||||||||    
T  23922444 ataataattttgatgcccctaaacaaatggtgttctgggttgttacctctcaagcccgccctcagggccacccctgc 23922520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 15670945 - 15670854
Alignment:
Q  17 taactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||||||||||||||||||||||||||  |  ||| ||| |  ||||||||||| ||||  ||||||| ||||||||| |||||||||||||    
T  15670945 taactactaagtaaaaataataattttactttcccaaaataattggtgccctggactgccacccctcccgcccgccctcagggccacccctg 15670854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 11383621 - 11383527
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||  |||||||||||  | | |||||||  |||  |||| ||||||||||||||    
T  11383621 tactaactactaaataaaaataataattttggt-gccctaaaaaagtggtgccctggaattccgcccctcaagccttccctcagggccacccctgc 11383527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 33510197 - 33510252
Alignment:
Q  15 actaactactaagtaaaaataataattttgatggcc-ctaaaaatatggtgccctg 69  Q
    ||||||||||||||||||||||||||||||||| ||  |||||| |||||||||||    
T  33510197 actaactactaagtaaaaataataattttgatgtccattaaaaaaatggtgccctg 33510252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 54417122 - 54417164
Alignment:
Q  15 actaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  54417122 actaactaccaagtaaaaataataattttgatggcccgaaaaa 54417164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 27541167 - 27541210
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaa 57  Q
    |||||| |||||| |||||||||||||||||||| |||||||||    
T  27541167 tactaattactaaataaaaataataattttgatgcccctaaaaa 27541210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 52706765 - 52706854
Alignment:
Q  19 actactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctg 108  Q
    |||||||| |||||||||||||||||||  || |||||| |||||| ||| | ||   |||||||| | ||||||| |||||||| ||||    
T  52706765 actactaaataaaaataataattttgatacccttaaaaaaatggtgtcctagactatcgcccctcccgtccgccctcagggccactcctg 52706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 17713305 - 17713273
Alignment:
Q  15 actaactactaagtaaaaataataattttgatg 47  Q
    ||||| |||||||||||||||||||||||||||    
T  17713305 actaattactaagtaaaaataataattttgatg 17713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 18257984 - 18258024
Alignment:
Q  13 atactaactactaagtaaaaataataattttgatggcccta 53  Q
    |||||||||| |||||||||||||||| ||||||| |||||    
T  18257984 atactaactattaagtaaaaataataaatttgatgtcccta 18258024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 19014534 - 19014502
Alignment:
Q  15 actaactactaagtaaaaataataattttgatg 47  Q
    ||||| |||||||||||||||||||||||||||    
T  19014534 actaattactaagtaaaaataataattttgatg 19014502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 5875 - 5785
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccaccc 105  Q
    ||||||||||| | ||||||||||||||||| || || ||  || |||||||| |||||| | |||||||  ||||||||| ||||||||||    
T  5875 tactaactactca-taaaaataataattttggtgcccatatgaagatggtgccttgggctcccgcccctctagcccgccctcagggccaccc 5785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 65067 - 64974
Alignment:
Q  14 tactaactactaagtaaaaataataattttgatggccctaaaaatatggtgccctgggctgctgcccctccggcccgccctgagggccacccctgc 109  Q
    |||||| ||||||||||| |||||||||||| || ||||||||| |||||||| ||| || | | |||| | | ||||||| ||||||||||||||    
T  65067 tactaattactaagtaaatataataattttg-tgcccctaaaaaaatggtgccttggactaccgtcccttccg-ccgcccttagggccacccctgc 64974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University