View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14315_low_6 (Length: 587)

Name: NF14315_low_6
Description: NF14315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14315_low_6
NF14315_low_6
[»] chr7 (3 HSPs)
chr7 (11-573)||(45621378-45621939)
chr7 (64-110)||(45623318-45623364)
chr7 (66-110)||(10209939-10209983)
[»] chr8 (5 HSPs)
chr8 (118-573)||(22603007-22603460)
chr8 (64-145)||(29781131-29781212)
chr8 (65-108)||(510296-510339)
chr8 (64-108)||(23124864-23124908)
chr8 (64-110)||(29642451-29642497)
[»] chr3 (6 HSPs)
chr3 (67-572)||(15214439-15214940)
chr3 (67-572)||(15253658-15254159)
chr3 (236-373)||(7043544-7043681)
chr3 (67-154)||(7043334-7043421)
chr3 (66-110)||(23217929-23217974)
chr3 (64-110)||(18983758-18983805)
[»] chr1 (4 HSPs)
chr1 (67-573)||(20187760-20188267)
chr1 (236-373)||(25613428-25613565)
chr1 (65-145)||(46119661-46119741)
chr1 (66-109)||(22048926-22048969)
[»] chr6 (8 HSPs)
chr6 (236-373)||(17722221-17722357)
chr6 (65-110)||(21686116-21686161)
chr6 (67-110)||(17721533-17721576)
chr6 (67-110)||(23158117-23158160)
chr6 (67-109)||(19000466-19000508)
chr6 (65-110)||(18763100-18763145)
chr6 (65-109)||(20879072-20879116)
chr6 (70-110)||(20014729-20014769)
[»] chr2 (4 HSPs)
chr2 (66-145)||(44923846-44923925)
chr2 (67-110)||(23463750-23463793)
chr2 (64-108)||(25423770-25423815)
chr2 (166-202)||(24056879-24056915)
[»] chr4 (4 HSPs)
chr4 (67-110)||(35579453-35579496)
chr4 (65-110)||(50380485-50380530)
chr4 (66-110)||(581741-581785)
chr4 (66-110)||(581434-581478)
[»] chr5 (6 HSPs)
chr5 (67-110)||(19832214-19832257)
chr5 (65-107)||(20670616-20670658)
chr5 (65-110)||(22542955-22543000)
chr5 (67-110)||(21116947-21116991)
chr5 (65-110)||(23196130-23196177)
chr5 (62-109)||(38930986-38931034)
[»] scaffold0164 (2 HSPs)
scaffold0164 (68-110)||(34289-34331)
scaffold0164 (67-110)||(6152-6196)
[»] scaffold0039 (1 HSPs)
scaffold0039 (65-110)||(79969-80015)
[»] scaffold0755 (1 HSPs)
scaffold0755 (67-110)||(4802-4846)
[»] scaffold0305 (1 HSPs)
scaffold0305 (67-110)||(891-935)


Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 573
Target Start/End: Original strand, 45621378 - 45621939
Alignment:
Q  11 cacagatgactaactagtagtaatagtaaatgggtaatcgagataaaatgcagttaatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  45621378 cacagatgactaactagtagtaatagtaacagggtaatcgagataaaacgcagttaatctatacctattaataaaggcagtactattttttgatgtagcc 45621477  T
Q  111 nnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtgtt 210  Q
           ||||||||||||||||||||||||||||||| |||||           | ||||||||||||||||||||||||||||||||||||| |||||    
T  45621478 tttttttgtacatcccaaaatgcctttacttgatggcaattattaaaaaaaaatatatgttttacccactaatcacacaccaaaacataactaccgtgtt 45621577  T
Q  211 tttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnnc 310  Q
    ||||||||       |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||       |    
T  45621578 tttctttgaaaaaaatctgacttaaccactaatcacactcacaaaaacataattgctacctt-ctctttctcacagttgcagaaacaatcataaaaaaac 45621676  T
Q  311 aattgcttccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggcccttcaatgacactgtttgcttc 410  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  45621677 aactgcttccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggcccctcaatgacattgtttgcttc 45621776  T
Q  411 taacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctctt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  45621777 taacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcatttattatgatcttgttgctaactcaaatggacatctctt 45621876  T
Q  511 atattgctaattacagtaatttataagcacatacttaatattactctcctgtcatgaagaaac 573  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  45621877 atattgctaattacagtaatttataagcacatacttaatattgctctcatgtcatgaagaaac 45621939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 45623318 - 45623364
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||    
T  45623318 ttaatctatacctattaataaaggcaatactttcttttggtgtagcc 45623364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 10209983 - 10209939
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||| || ||||||| | |||||||||||||    
T  10209983 aatctatacctattaatatagccaatactttcttttggtgtagcc 10209939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 118 - 573
Target Start/End: Original strand, 22603007 - 22603460
Alignment:
Q  118 gtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnntctgttttacccactaatcacacaccaaaacataactactgtgtttttcttt 217  Q
    ||||||||||||||||| |||||||||||||||||||           |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  22603007 gtacatcccaaaatgcccttacttgatggcagttattaaaaaaaaa--tctgctttacccactaatcacacaccaaagcataactactgtgtttttcttt 22603104  T
Q  218 gnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgct 317  Q
    |       ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||       ||| ||||    
T  22603105 gaaaaaaatctggcttacctactaatcacactcacaaaaacataattgctacctttctctttctcacagttgcataaacaatcataaaaaaacaactgct 22603204  T
Q  318 tccattctatttctcacaattgaatggtttagttctacacaatttatcaaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  22603205 tccattctatttctcacaattgaatggtttagttctacacaatttattaaacaattattcagagaaaggcccctcaatgacaccgtttgcttctaacttc 22603304  T
Q  418 tccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22603305 tccatcactttttggtacgtcatgtttaaattttgcaatggaatacttgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgc 22603404  T
Q  518 taattacagtaatttataagcacatacttaatattactctcctgtcatgaagaaac 573  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22603405 taattacagaaatttataagcacatacttaatattgctctcctgtcatgaagaaac 22603460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 29781131 - 29781212
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||||||||| ||||||||||    
T  29781131 ttaatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttacttgatg 29781212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 510339 - 510296
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtag 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  510339 taatctatacctattaataaaggcaatactattttttggtgtag 510296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 23124908 - 23124864
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtag 108  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  23124908 ttaatctatacctattaataaaggcaatattattttttggtgtag 23124864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 29642497 - 29642451
Alignment:
Q  64 ttaatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||    
T  29642497 ttaatctatacctattaataaagacaatacatgtttttggtgtagcc 29642451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 67 - 572
Target Start/End: Complemental strand, 15214940 - 15214439
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnt 166  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||       ||| ||||||||||||| |||||||||||||||||||           |    
T  15214940 atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-t 15214842  T
Q  167 ctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgc 266  Q
    ||| |||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||| |||||||||||||||||||| ||||||||||    
T  15214841 ctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataattgc 15214742  T
Q  267 tacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttatca 366  Q
    ||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  15214741 tacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttatta 15214642  T
Q  367 aacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttg 466  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||    
T  15214641 aacaattgttcagagaaaggcccctcaatgacactgtttgcttctaacttctccatcactttttggtatgtcatgtttaaatt---caatggaatacttg 15214545  T
Q  467 atcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtcatg 566  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  15214544 atcctttcttatgatcatgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatatttaatattgttctcctgtcatg 15214445  T
Q  567 aagaaa 572  Q
    ||||||    
T  15214444 aagaaa 15214439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 67 - 572
Target Start/End: Complemental strand, 15254159 - 15253658
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnt 166  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||       ||| ||||||||||||| |||||||||||||||||||           |    
T  15254159 atctttacctattaataaaggcaatacaattttttggtgtaacctttttttgtaaatcccaaaatgcccttacttgatggcagttattaaaaaaaaaa-t 15254061  T
Q  167 ctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgc 266  Q
    ||| |||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||| |||||||||||||||||||| ||||||||||    
T  15254060 ctgctttacccactaatcacacaccaaaacataactgctgtatttttctttgaaaaaaatctggcttacccactaatcacactcacaaatacataattgc 15253961  T
Q  267 tacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcacaattgaatggtttagttctacacaatttatca 366  Q
    ||||||||||||||||||||| ||||||||||||||       ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  15253960 tacctttctctttctcacagttgcagaaacaatcataaaaaaacaactgcttccattctatttttcacaattgaatggtttagttctacacaatttatta 15253861  T
Q  367 aacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatacttg 466  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||    
T  15253860 aacaattgttcagagaaaggcccctcaatgacactgtttgcttctaacttctccatcactttttggtatgtcatgtttaaatt---caatggaatacttg 15253764  T
Q  467 atcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtcatg 566  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  15253763 atcctttcttatgatcatgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatatttaatattgttctcctgtcatg 15253664  T
Q  567 aagaaa 572  Q
    ||||||    
T  15253663 aagaaa 15253658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 236 - 373
Target Start/End: Original strand, 7043544 - 7043681
Alignment:
Q  236 ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca 335  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||||    
T  7043544 ccactaatcacactcacaaaatcataactgttgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca 7043643  T
Q  336 attgaatggtttagttctacacaatttatcaaacaatt 373  Q
    |||| |||||||| ||||||||||||||| ||||||||    
T  7043644 attgcatggtttacttctacacaatttattaaacaatt 7043681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 7043334 - 7043421
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttatt 154  Q
    |||||||||||||||||||| ||||||||||||| ||||||| |       ||| ||||||||||| | |||||| |||| |||||||    
T  7043334 atctatacctattaataaaggcaatactatttttgggtgtagtctttttttgtaaatcccaaaatgtccttacttcatggtagttatt 7043421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 23217929 - 23217974
Alignment:
Q  66 aatctatacctattaataaagacaatac-tattttttggtgtagcc 110  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  23217929 aatctatacctattaataaagacaatactttttttttggtgtagcc 23217974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 18983758 - 18983805
Alignment:
Q  64 ttaatctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||    
T  18983758 ttaatctatacctattaataaaggcaatacttttcttttggtgtagcc 18983805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 67 - 573
Target Start/End: Original strand, 20187760 - 20188267
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatggcagttattnnnnnnnnnnnt 166  Q
    |||||||||||||||||||| || ||||||| | ||||||||||       ||| ||||| ||||||| ||| |||||||| ||||||           |    
T  20187760 atctatacctattaataaaggcagtactattatgtggtgtagcctttttttgtaaatccccaaatgcccttatttgatggccgttattaaaaaaaaaa-t 20187858  T
Q  167 ctgttttacccactaatcacacaccaaaacataactactgtgtttttctttgnnnnnnntctggcttaaccactaatcacactcacaaaaacataattgc 266  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||| || ||||||||||||||||||||||||||||    
T  20187859 ctgctttacccactaatcacacaccaaaacataactgctgtgtttttctttgaaaaaaatctggcttaccccctaatcacactcacaaaaacataattgc 20187958  T
Q  267 tacctttctctttctcacagtagcagaaacaatcatnnnnnnn--caattgcttccattctatttctcacaattgaatggtttagttctacacaatttat 364  Q
    ||| ||||||||||||| ||| ||||||||||||||         ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20187959 tacgtttctctttctcatagttgcagaaacaatcatataaaaaaacaattgcttccattctatttctcacaattaaatggtttagttctacacaatttat 20188058  T
Q  365 caaacaattattcagagaaaggcccttcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatact 464  Q
     |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20188059 taaacaattgttcagagaagggcccctcaatgacactgtttgcttctaacttctccatcactttttggtacgtcatgtttaaattttgcaatggaatact 20188158  T
Q  465 tgatcctttcttatgatcttgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacatacttaatattactctcctgtca 564  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |||    
T  20188159 tgatcctttcttatgatcctgttgctaactcaaatggacatctcttatattgctaattacagtaatttataagcacgtatttaatattgctctcctatca 20188258  T
Q  565 tgaagaaac 573  Q
    |||||||||    
T  20188259 tgaagaaac 20188267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 236 - 373
Target Start/End: Original strand, 25613428 - 25613565
Alignment:
Q  236 ccactaatcacactcacaaaaacataattgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctcaca 335  Q
    ||||||||||||||||  ||| ||||| |||| ||||||||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||||    
T  25613428 ccactaatcacactcaagaaatcataactgctgcctttctctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctcaca 25613527  T
Q  336 attgaatggtttagttctacacaatttatcaaacaatt 373  Q
    |||  |||||||| ||||||||||||||| ||||||||    
T  25613528 atttcatggtttacttctacacaatttattaaacaatt 25613565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 46119661 - 46119741
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 145  Q
    |||||||||||||||||||||| |||||||||||||||||||| |        ||| ||||||||||||| ||||||||||    
T  46119661 taatctatacctattaataaaggcaatactattttttggtgtaacatttttttgtaaatcccaaaatgcccttacttgatg 46119741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 22048969 - 22048926
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagc 109  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  22048969 aatctatacctattaataaaggcaatacttttttttgttgtagc 22048926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 236 - 373
Target Start/End: Original strand, 17722221 - 17722357
Alignment:
Q  236 ccactaatcacactcacaaaaacataa--ttgctacctttctctttctcacagtagcagaaacaatcatnnnnnnncaattgcttccattctatttctca 333  Q
    ||||||||||||||||||||| |||||  |||||   || |||||||||| | | ||||||||||| ||       ||||||||||||||||||||||||    
T  17722221 ccactaatcacactcacaaaatcataacgttgct---ttactctttctcaaaattgcagaaacaattataagaaaacaattgcttccattctatttctca 17722317  T
Q  334 caattgaatggtttagttctacacaatttatcaaacaatt 373  Q
    |||||| |||||||| ||||| ||||||||| ||||||||    
T  17722318 caattgcatggtttacttctatacaatttattaaacaatt 17722357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 21686161 - 21686116
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||    
T  21686161 taatctatacctattaataaaggcaatacttttttttggtgtagcc 21686116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 17721533 - 17721576
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||||||||||||| |||||    
T  17721533 atctatacctattaataaaggcaatactattttttggtttagcc 17721576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 23158117 - 23158160
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  23158117 atctatacctattaataaagacaatacttttgtttggtgtagcc 23158160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 19000466 - 19000508
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagc 109  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  19000466 atctatacctattaataaaggcaatactatattttggtgtagc 19000508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 18763100 - 18763145
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  18763100 taatctatacctattaataaagacagtacttttgtttggtgtagcc 18763145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 20879072 - 20879116
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagc 109  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||    
T  20879072 taatctatacctattaataaaggcaatatttttttttggtgtagc 20879116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 20014729 - 20014769
Alignment:
Q  70 tatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||| ||||||| || ||||||||||||    
T  20014729 tatacctattaataaaggcaatacttttgtttggtgtagcc 20014769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 44923925 - 44923846
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagccnnnnnnngtacatcccaaaatgcctttacttgatg 145  Q
    ||||||||||||||||||||| |||||||||||||||||||||||       ||| ||||||||||||| ||| ||||||    
T  44923925 aatctatacctattaataaaggcaatactattttttggtgtagcctttttttgtaaatcccaaaatgcccttatttgatg 44923846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 23463793 - 23463750
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| | |||||||||||||    
T  23463793 atctatacctattaataaaggcaatactttgttttggtgtagcc 23463750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 25423815 - 25423770
Alignment:
Q  64 ttaatctatacctattaataaagacaatactatt-ttttggtgtag 108  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||    
T  25423815 ttaatctatacctattaataaaggcaatacttttcttttggtgtag 25423770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 24056915 - 24056879
Alignment:
Q  166 tctgttttacccactaatcacacaccaaaacataact 202  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  24056915 tctgctttacccactaatcacacatcaaaacataact 24056879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 35579496 - 35579453
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  35579496 atctatacctattaataaaggcaatactattttttggtgtagcc 35579453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 50380530 - 50380485
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||    
T  50380530 taatctatacctattaataaaggaaatacttttttttggtgtagcc 50380485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 581741 - 581785
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  581741 aatctatacctattaataaagacaatactttaatttggtgtagcc 581785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 581434 - 581478
Alignment:
Q  66 aatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||    
T  581434 aatctatacctattaataaaggcaatactttagtttggtgtagcc 581478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 19832214 - 19832257
Alignment:
Q  67 atctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  19832214 atctatacctattaataaaggcaatacttttttttggtgtagcc 19832257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 20670658 - 20670616
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgta 107  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  20670658 taatctatacctattaataaatgcaatactattttttggtgta 20670616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 22542955 - 22543000
Alignment:
Q  65 taatctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||| ||||||||||||||||| ||||||| ||||||| |||||||    
T  22542955 taatatatacctattaataaaggcaatacttttttttgatgtagcc 22543000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 21116991 - 21116947
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  21116991 atctatacctattaataaaggcaatacttttgttttggtgtagcc 21116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 23196177 - 23196130
Alignment:
Q  65 taatctatacctattaataaagacaatactattt--tttggtgtagcc 110  Q
    |||||||||||||||||||||| ||||||| |||  ||||||||||||    
T  23196177 taatctatacctattaataaaggcaatactttttggtttggtgtagcc 23196130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 38931034 - 38930986
Alignment:
Q  62 agttaatctatacctattaataaagacaatactatt-ttttggtgtagc 109  Q
    |||| |||||||||||||||||||| ||||||| || ||||||||||||    
T  38931034 agtttatctatacctattaataaaggcaatacttttcttttggtgtagc 38930986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 34289 - 34331
Alignment:
Q  68 tctatacctattaataaagacaatactattttttggtgtagcc 110  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  34289 tctatacctattaataaagggaatactattttttggtgtagcc 34331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 6152 - 6196
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  6152 atctatacctattaataaaggcaatacttttcttttggtgtagcc 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 79969 - 80015
Alignment:
Q  65 taatctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||    
T  79969 taatctatacctattaataaaggcaatacttttgttttggtgtagcc 80015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 4802 - 4846
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  4802 atctatacctattaataaaggcaatacttttattttggtgtagcc 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 935 - 891
Alignment:
Q  67 atctatacctattaataaagacaatactatt-ttttggtgtagcc 110  Q
    |||||||||||||||||||| ||||||| || |||||||||||||    
T  935 atctatacctattaataaaggcaatacttttcttttggtgtagcc 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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