View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14316_high_1 (Length: 479)

Name: NF14316_high_1
Description: NF14316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14316_high_1
NF14316_high_1
[»] chr2 (8 HSPs)
chr2 (1-210)||(4715079-4715288)
chr2 (209-352)||(23348958-23349101)
chr2 (206-352)||(18355291-18355437)
chr2 (220-352)||(12741699-12741831)
chr2 (208-352)||(10328869-10329014)
chr2 (209-352)||(1615893-1616035)
chr2 (210-346)||(24454516-24454651)
chr2 (353-420)||(22625294-22625362)
[»] chr3 (13 HSPs)
chr3 (208-415)||(2549936-2550142)
chr3 (209-352)||(31685077-31685220)
chr3 (207-352)||(53973264-53973409)
chr3 (207-346)||(24815913-24816052)
chr3 (209-352)||(37982349-37982492)
chr3 (209-346)||(24761882-24762019)
chr3 (216-352)||(19882089-19882225)
chr3 (208-346)||(12538620-12538757)
chr3 (209-346)||(17681767-17681903)
chr3 (207-346)||(53027736-53027875)
chr3 (208-346)||(53352745-53352883)
chr3 (417-479)||(2555172-2555234)
chr3 (216-263)||(47763981-47764028)
[»] chr8 (10 HSPs)
chr8 (208-352)||(14677999-14678143)
chr8 (208-352)||(5657770-5657914)
chr8 (208-352)||(31100850-31100994)
chr8 (209-346)||(27541543-27541679)
chr8 (209-284)||(24788079-24788154)
chr8 (226-346)||(5662583-5662702)
chr8 (209-284)||(23738657-23738731)
chr8 (208-262)||(33689362-33689416)
chr8 (209-268)||(24787157-24787218)
chr8 (209-268)||(8158461-8158520)
[»] chr5 (8 HSPs)
chr5 (208-352)||(22009506-22009650)
chr5 (209-352)||(9043802-9043945)
chr5 (208-352)||(7473467-7473611)
chr5 (210-352)||(30442525-30442667)
chr5 (209-285)||(19085422-19085498)
chr5 (220-306)||(26840988-26841074)
chr5 (215-346)||(22004441-22004571)
chr5 (207-267)||(30463113-30463174)
[»] chr7 (5 HSPs)
chr7 (209-352)||(1262088-1262231)
chr7 (208-352)||(43071360-43071504)
chr7 (209-352)||(26909959-26910102)
chr7 (209-352)||(48849785-48849928)
chr7 (216-285)||(22007347-22007416)
[»] scaffold0035 (1 HSPs)
scaffold0035 (209-352)||(35063-35206)
[»] chr4 (3 HSPs)
chr4 (209-352)||(29863339-29863482)
chr4 (209-270)||(12506436-12506497)
chr4 (232-284)||(24260243-24260294)
[»] scaffold0096 (1 HSPs)
scaffold0096 (209-346)||(27410-27546)
[»] scaffold0045 (1 HSPs)
scaffold0045 (207-352)||(11612-11757)
[»] chr6 (10 HSPs)
chr6 (216-352)||(33045409-33045545)
chr6 (208-338)||(10092511-10092641)
chr6 (216-346)||(8976411-8976541)
chr6 (209-321)||(3065698-3065809)
chr6 (209-285)||(16246702-16246778)
chr6 (208-285)||(30908414-30908492)
chr6 (210-284)||(4660222-4660295)
chr6 (351-424)||(21762113-21762188)
chr6 (421-478)||(826612-826671)
chr6 (421-478)||(21762211-21762270)
[»] scaffold0596 (1 HSPs)
scaffold0596 (208-352)||(653-797)
[»] chr1 (1 HSPs)
chr1 (208-285)||(50990906-50990983)
[»] scaffold0157 (1 HSPs)
scaffold0157 (209-270)||(13980-14041)
[»] scaffold0475 (1 HSPs)
scaffold0475 (218-284)||(7520-7585)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4715079 - 4715288
Alignment:
Q  1 atcagtttagcatgtataacaatatctcttatgtgatttttgttaaattaaaatgaccgtacgttatttagttgattatgttttggtgcagatatttatt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4715079 atcagttttgcatgtataacaatatctcttatgtgatttttgttaaattaaaatgaccgtacgttatttagttgattatgttttggtgcagatatttatt 4715178  T
Q  101 tatgcacttgtttgttgcaattgatctttcaccaacagaagttttgttcaacnnnnnnnacattagtgtgtgttataggcaacaaattttattccagtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||    
T  4715179 tatgcacttgtttgttgcaattgatctttcaccaacagaagttttgttcaactttttttacattagtgtgtgttttaggcaacaaattttattccagtaa 4715278  T
Q  201 ttcgatttat 210  Q
    ||||||||||    
T  4715279 ttcgatttat 4715288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 23349101 - 23348958
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  23349101 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 23349002  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  23349001 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 23348958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 206 - 352
Target Start/End: Complemental strand, 18355437 - 18355291
Alignment:
Q  206 tttatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatc 305  Q
    |||||||||||||||| ||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  18355437 tttatcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatc 18355338  T
Q  306 tcatcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  18355337 tcatcatttggctaagcatgcatctcatcctttaatctaatctgagt 18355291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 12741699 - 12741831
Alignment:
Q  220 atctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcatcatttggcta 319  Q
    |||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggcta 12741798  T
Q  320 agcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||| |||||    
T  12741799 agcatgcatctcatcctttgatctaatctgagt 12741831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 10329014 - 10328869
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||| ||||||| || |||||||| ||||||||| ||||||    
T  10329014 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctc 10328915  T
Q  308 atcatttggctaagcatgcatctcatcc-tttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  10328914 atcatttggctaagcatgcatctcatccttttgatctaatctgagt 10328869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 1616035 - 1615893
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||| |||||||| |||| || ||||||||| ||||||||||| || |  |||| |||||||||||| |||||||| |||| |||  |||| |||| ||    
T  1616035 atcatccttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcgca 1615937  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1615936 tcatttggctaagcatgcatctcatcctttgatctaatttgagt 1615893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 346
Target Start/End: Original strand, 24454516 - 24454651
Alignment:
Q  210 tcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcat 309  Q
    |||||||||||||||||| | ||||||||||||||   | ||||||| |||||||||||||  ||| ||| || |||||||   ||||||| ||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgcc-aaacaaggagggccgttggatctcat 24454614  T
Q  310 catttggctaagcatgcatctcatcctttgatctaat 346  Q
    |||||||||   ||| |||||||||||||||||||||    
T  24454615 catttggcttgacattcatctcatcctttgatctaat 24454651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 22625362 - 22625294
Alignment:
Q  353 tagtgctttcctactcagcaagctga-ttcaatttttaaattttcctcccacagcctttgcattatgcc 420  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||  |||||||||| ||||    
T  22625362 tagtgctttcctactcagcaagttgagttcaatttttaaatttccctcccacgacctttgcattgtgcc 22625294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 8e-90; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 208 - 415
Target Start/End: Original strand, 2549936 - 2550142
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||     
T  2549936 tatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct- 2550034  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagttagtgctttcctactcagcaagctgattcaatttttaaattttcctcccacagcc 407  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2550035 atcatttggctaagcatgcatctcatcctttgatttaatctgagttagtgctttcctactcagcaagctgattcaatttttaaactttcctcccacagcc 2550134  T
Q  408 tttgcatt 415  Q
    ||||||||    
T  2550135 tttgcatt 2550142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 31685077 - 31685220
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||  ||||||    
T  31685077 atcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctca 31685176  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  31685177 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 31685220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 53973409 - 53973264
Alignment:
Q  207 ttatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatct 306  Q
    ||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  53973409 ttatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatct 53973310  T
Q  307 catcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  53973309 catcatttggctaagcctgcatctcatcctttgatctaatctgagt 53973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 24815913 - 24816052
Alignment:
Q  207 ttatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatct 306  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||||| |||||    
T  24815913 ttatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatct 24816012  T
Q  307 catcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  24816013 catcatttggctcagcatgcatctcatcctttgatctaat 24816052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 37982349 - 37982492
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  37982349 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 37982448  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  37982449 tcatttggctaagcatgcatctcatcctttaatctaatctgagt 37982492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 24762019 - 24761882
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||| |||||||    
T  24762019 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctca 24761920  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24761919 tcatttggctcagcatgcatctcatcctttgatctaat 24761882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 19882225 - 19882089
Alignment:
Q  216 ttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcatcatttg 315  Q
    |||||||||||| || ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
Q  316 gctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||| |||||    
T  19882125 gctaagcatgcatctcatcctttgatctaatctgagt 19882089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 346
Target Start/End: Complemental strand, 12538757 - 12538620
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  12538757 tatcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctc 12538659  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  12538658 atcatttggctaagcatgcatcacatcctttgatctaat 12538620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 17681767 - 17681903
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaaggggggccgttggatctca 17681865  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    |||||||| |||||||||||||||||||||||||||||    
T  17681866 tcatttggttaagcatgcatctcatcctttgatctaat 17681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 207 - 346
Target Start/End: Complemental strand, 53027875 - 53027736
Alignment:
Q  207 ttatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatct 306  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||  |    | ||||| |||||    
T  53027875 ttatcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatct 53027776  T
Q  307 catcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  53027775 catcatttggctcagcatgcatctcatcctttgatctaat 53027736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 208 - 346
Target Start/End: Complemental strand, 53352883 - 53352745
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |    | ||||| ||||||    
T  53352883 tatcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctc 53352784  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    ||||||||||| ||  |||||||||||||||||| ||||    
T  53352783 atcatttggctcagtgtgcatctcatcctttgatttaat 53352745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 2555172 - 2555234
Alignment:
Q  417 tgccgatgacatttaataccctatcctcatttctatgtttccaatgtgattgttattcttctc 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2555172 tgccgatgacatttaataccctatcctcatttctatgtttccaatatgattgttattcttctc 2555234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 47764028 - 47763981
Alignment:
Q  216 ttatatctaatccttattaacattgctaatgactttgcaaaccctaaa 263  Q
    ||||||||||||||  |||||||||||||| |||||||||| ||||||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaa 47763981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 14678143 - 14677999
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  14678143 tatcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 14678044  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  14678043 atcatttggctaagcatgcatctcatcctttgatctaatctgagt 14677999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 5657770 - 5657914
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||    
T  5657770 tatcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctc 5657869  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||    
T  5657870 atcatttggttaagcatgcatctcatcctttgatctaatctgagt 5657914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 31100994 - 31100850
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  31100994 tatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctc 31100895  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||    
T  31100894 atcatttggttaagcatgtatctcatcctttgatctaatctgagt 31100850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 27541679 - 27541543
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||| |||||||    
T  27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctcc-aaacaagggacgccgttggatctca 27541581  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27541580 tcatttggctaagcatgcatctcatcctttgatctaat 27541543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 24788154 - 24788079
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 284  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  24788154 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 226 - 346
Target Start/End: Original strand, 5662583 - 5662702
Alignment:
Q  226 tccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagagg-ccgttagatctcatcatttggctaagcat 324  Q
    |||| ||||| ||||||||||||||||||||||||||||||| ||  ||| ||| ||||  |||| |||| |||||||||||||||||||||||| ||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caag-gaggtccgttagatctcatcatttggctaggcat 5662680  T
Q  325 gcatctcatcctttgatctaat 346  Q
     |||||||||||||||| ||||    
T  5662681 tcatctcatcctttgatttaat 5662702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 23738657 - 23738731
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 284  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  23738657 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 33689416 - 33689362
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaa 262  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||| |||||||    
T  33689416 tatcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 24787218 - 24787157
Alignment:
Q  209 atcatacttatatctaatcctt--attaacattgctaatgactttgcaaaccctaaacctaa 268  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||| |||||| ||||    
T  24787218 atcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaaactaa 24787157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 8158461 - 8158520
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaa 268  Q
    ||||||||||||||||||  || |||||| ||||||| || ||||||| |||||||||||    
T  8158461 atcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaa 8158520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 22009650 - 22009506
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  22009650 tatcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 22009551  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  22009550 atcatttggctaagcatgcatctcatcctttgatctaatctgagt 22009506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 9043802 - 9043945
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  9043802 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 9043901  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  9043902 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 9043945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 7473611 - 7473467
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  7473611 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 7473512  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  7473511 atcatttagctaagcatgcatctcatcctttgatctaatctgagt 7473467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 30442667 - 30442525
Alignment:
Q  210 tcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcat 309  Q
    |||| ||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  310 catttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  30442567 catttggctaagcatgcatctcatcctttgatctaatctgagt 30442525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 19085498 - 19085422
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 285  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 19085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
Q  220 atctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatct 306  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 26840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 346
Target Start/End: Complemental strand, 22004571 - 22004441
Alignment:
Q  215 cttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcatcattt 314  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||||| || |||| ||| || || ||||   | ||||| |||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgcc-aatcaaggtggtccgttggatctcatcattt 22004473  T
Q  315 ggctaagcatgcatctcatcctttgatctaat 346  Q
    |||| ||||| ||| |||||||||||||||||    
T  22004472 ggctcagcattcatatcatcctttgatctaat 22004441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 30463174 - 30463113
Alignment:
Q  207 ttatcatacttatatctaatccttattaacattgctaatgactttgc-aaaccctaaaccta 267  Q
    ||||||||||||||||||||| || |||||| ||||||| || |||| ||||||||||||||    
T  30463174 ttatcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaaccta 30463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 1262088 - 1262231
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||    
T  1262088 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctca 1262187  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1262188 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 1262231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 208 - 352
Target Start/End: Complemental strand, 43071504 - 43071360
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  43071504 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 43071405  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  43071404 atcatttggctaagcatgcatctcatcctttgatctaatctgagt 43071360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 26910102 - 26909959
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || || ||||| |    
T  26910102 atcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctta 26910003  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  26910002 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 26909959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 48849928 - 48849785
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||    ||| |||||||    
T  48849928 atcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctca 48849829  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  48849828 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 48849785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 22007347 - 22007416
Alignment:
Q  216 ttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 285  Q
    |||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa 22007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 35063 - 35206
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||||    
T  35063 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctca 35162  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  35163 tcatttggctaagcatgcatctcatcctttgatctaatctgagt 35206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 29863482 - 29863339
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||| ||||||||||||||||||||||||||| |||||    
T  29863382 tcatttggctgagcatgcatctcatcctttgatctaatctgagt 29863339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 12506436 - 12506497
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaat 270  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  12506436 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 24260243 - 24260294
Alignment:
Q  232 ttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 284  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  24260243 ttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 24260294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 27410 - 27546
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  27410 atcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctca 27508  T
Q  309 tcatttggctaagcatgcatctcatcctttgatctaat 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27509 tcatttggctaagcatgcatctcatcctttgatctaat 27546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 11757 - 11612
Alignment:
Q  207 ttatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatct 306  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||    
T  11757 ttatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatct 11658  T
Q  307 catcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||    
T  11657 catcatttggttaagcatgcatctcatcctttgatttaatctgagt 11612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 33045545 - 33045409
Alignment:
Q  216 ttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcatcatttg 315  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg 33045446  T
Q  316 gctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    | ||||||||||||||||||||||||||||| |||||    
T  33045445 gttaagcatgcatctcatcctttgatctaatctgagt 33045409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 10092511 - 10092641
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  10092511 tatcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctc 10092610  T
Q  308 atcatttggctaagcatgcatctcatccttt 338  Q
    |||||||||||||||||||||||||| ||||    
T  10092611 atcatttggctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 216 - 346
Target Start/End: Original strand, 8976411 - 8976541
Alignment:
Q  216 ttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctcatcatttg 315  Q
    |||||||||||| || |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||| ||||| |||||||| ||||     
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
Q  316 gctaagcatgcatctcatcctttgatctaat 346  Q
    ||||| |||||||||||||||||||||||||    
T  8976511 gctaaacatgcatctcatcctttgatctaat 8976541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 3065698 - 3065809
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctca 308  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||    
T  3065698 atcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctcc-aaacaagggagaccgttggatctca 3065796  T
Q  309 tcatttggctaag 321  Q
    |||||||||||||    
T  3065797 tcatttggctaag 3065809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 16246702 - 16246778
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 285  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16246702 atcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa 16246778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 30908492 - 30908414
Alignment:
Q  208 tatcatactt-atatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 285  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30908492 tatcatactttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa 30908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 4660295 - 4660222
Alignment:
Q  210 tcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 284  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 21762113 - 21762188
Alignment:
Q  351 gttagtgcttt-cctactcagcaagctga-ttcaatttttaaattttcctcccacagcctttgcattatgccgatg 424  Q
    ||||||||||| |||||||| |||||| | |||||||||||||||| ||||||||| | |||||||| ||||||||    
T  21762113 gttagtgcttttcctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgcattctgccgatg 21762188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 826671 - 826612
Alignment:
Q  421 gatgacatttaata--ccctatcctcatttctatgtttccaatgtgattgttattcttct 478  Q
    ||||||||||||||  |||||||||||||||||| ||||||| |||| ||||||| ||||    
T  826671 gatgacatttaatataccctatcctcatttctatatttccaacgtgactgttattgttct 826612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 21762211 - 21762270
Alignment:
Q  421 gatgacatttaata--ccctatcctcatttctatgtttccaatgtgattgttattcttct 478  Q
    ||||||||||||||  |||||||||||||||||| ||||||| |||| ||||||| ||||    
T  21762211 gatgacatttaatataccctatcctcatttctatatttccaacgtgactgttattgttct 21762270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 653 - 797
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagagaggccgttagatctc 307  Q
    |||||||||||||||| ||| || ||||||||||||||||  |||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  653 tatcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctc 752  T
Q  308 atcatttggctaagcatgcatctcatcctttgatctaatatgagt 352  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  753 atcatttggctaagcatgcatctcatcctttgatctaatctgagt 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 50990906 - 50990983
Alignment:
Q  208 tatcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 285  Q
    |||| ||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  50990906 tatcttacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa 50990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 14041 - 13980
Alignment:
Q  209 atcatacttatatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaat 270  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  14041 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 7585 - 7520
Alignment:
Q  218 atatctaatccttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 284  Q
    |||| ||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University