View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14316_high_2 (Length: 433)

Name: NF14316_high_2
Description: NF14316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14316_high_2
NF14316_high_2
[»] chr7 (1 HSPs)
chr7 (16-416)||(45679292-45679692)
[»] chr4 (1 HSPs)
chr4 (203-286)||(10452359-10452442)
[»] chr5 (2 HSPs)
chr5 (202-292)||(36522282-36522372)
chr5 (220-281)||(18091074-18091135)
[»] chr3 (3 HSPs)
chr3 (205-262)||(25991456-25991513)
chr3 (216-264)||(3384325-3384373)
chr3 (202-262)||(2417742-2417802)
[»] chr2 (3 HSPs)
chr2 (202-282)||(2323649-2323728)
chr2 (202-282)||(2336657-2336737)
chr2 (216-282)||(30323497-30323563)
[»] scaffold0113 (1 HSPs)
scaffold0113 (202-292)||(39861-39951)
[»] chr8 (6 HSPs)
chr8 (180-260)||(5870399-5870479)
chr8 (208-264)||(5974596-5974652)
chr8 (201-261)||(34835263-34835323)
chr8 (201-261)||(34835529-34835589)
chr8 (201-261)||(34835795-34835855)
chr8 (202-282)||(40991786-40991866)


Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 45679292 - 45679692
Alignment:
Q  16 aatattcccatgatcaactgtgaatccatccattctttatgagtgtgctccccttcaaaacggaaattttccatccatatcaacttgcaccgtcgttggt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679292 aatattcccatgatcaactgtgaatccatccattctttatgagtgtgctccccttcaaaacggaaattttccatccatatcaacttgcaccgtcgttggt 45679391  T
Q  116 ggcactcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccacattata 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679392 ggccctcaacgggacgtgtcacctaaacaccttggtcagaaagactttcttcacattaagctttgaataatcatataaatgaatttgacaccacattata 45679491  T
Q  216 acccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatccaatgtagccttttactcacacttgatat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  45679492 acccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccattttttcatccaatgtagacttttactcacacttgatat 45679591  T
Q  316 caacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacggtctaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45679592 caacatgtatttatggacaacattaaactgtgttttttatgtctaaatatgaagcggttttggggtgagaagtgtcatctcaaacaaagaacggtctaat 45679691  T
Q  416 t 416  Q
    |    
T  45679692 t 45679692  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 10452359 - 10452442
Alignment:
Q  203 acaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatc 286  Q
    |||||||||| ||||  |||||||||||| || |||||||| |||||||||  ||||| ||| |  ||||||||||||||||||    
T  10452359 acaccacattttaactaaaaactttaaggcatgaagtttatgggtcctctcttttatatagtgttaaacatccatttttccatc 10452442  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 36522282 - 36522372
Alignment:
Q  202 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatccaatgt 292  Q
    ||||||||| | | ||||||||| ||||| || |  |||||| |||||||||||||||||| | | |||| |||||||||| |||||||||    
T  36522282 gacaccacactcttacccaaaaccttaagataatgggtttattggtcctctcacttataaaatgttcaacttccatttttctatccaatgt 36522372  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 18091135 - 18091074
Alignment:
Q  220 aaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccattttt 281  Q
    ||||| ||||| ||||| ||||||||||| |||||| |||||| ||| |||||| |||||||    
T  18091135 aaaaccttaagatattaggtttataggtcatctcacatataaaatattcaacattcattttt 18091074  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 25991513 - 25991456
Alignment:
Q  205 accacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaa 262  Q
    |||||| | ||||||||||| |||||| |||| |||||||||| ||||||||||||||    
T  25991513 accacactttaacccaaaaccttaaggcattaggtttataggttctctcacttataaa 25991456  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 3384325 - 3384373
Alignment:
Q  216 acccaaaactttaaggtattaagtttataggtcctctcacttataaagt 264  Q
    |||||||||||||||| ||||||||||| ||||||||  ||||||||||    
T  3384325 acccaaaactttaaggcattaagtttatgggtcctcttccttataaagt 3384373  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 2417802 - 2417742
Alignment:
Q  202 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaa 262  Q
    ||||||||| | ||| |||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  2417802 gacaccacaatttaatccaaaactctaaagcattgagtttatagatcctctcacttataaa 2417742  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 2323728 - 2323649
Alignment:
Q  202 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 282  Q
    ||||||||||  ||||| ||||| |||||| |||  |||||| | |||||||||||||||||| |||||| ||||||||||    
T  2323728 gacaccacatcttaacctaaaaccttaaggcattg-gtttatggatcctctcacttataaagtgtccaacctccatttttc 2323649  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 2336737 - 2336657
Alignment:
Q  202 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 282  Q
    ||||||||||  ||||||||||  |||||| ||| | ||||| |||||||||||||||||||| | |||| |||| |||||    
T  2336737 gacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttc 2336657  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 30323563 - 30323497
Alignment:
Q  216 acccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 282  Q
    ||||||||| |||||| | | ||||||||||||||||||||| |||||| | |||| |||| |||||    
T  30323563 acccaaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttc 30323497  T

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Target: scaffold0113 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 39951 - 39861
Alignment:
Q  202 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttccatccaatgt 292  Q
    ||||||||||| | | |||||| ||||||||| ||||||||||  || ||||||||||||||  ||||||  ||| ||||| |||| ||||    
T  39951 gacaccacatttttaaccaaaattttaaggtaataagtttatatctcatctcacttataaagagtccaaccaccacttttctatccgatgt 39861  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 5870479 - 5870399
Alignment:
Q  180 gaataatcatataaatgaatttgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttata 260  Q
    ||||||||| | |||| | || || ||||||| ||||| ||||| |||||| |||| ||||||| ||| ||||||||||||    
T  5870479 gaataatcacacaaataagttggataccacatcataactcaaaattttaagatattgagtttatgggttctctcacttata 5870399  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 5974652 - 5974596
Alignment:
Q  208 acattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagt 264  Q
    ||||| ||||| ||||| |||||  |||| ||||||||||| |||||||||||||||    
T  5974652 acattttaaccaaaaacattaagacattaggtttataggtcatctcacttataaagt 5974596  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 34835323 - 34835263
Alignment:
Q  201 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 261  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835323 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835263  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 34835589 - 34835529
Alignment:
Q  201 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 261  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835589 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835529  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 34835855 - 34835795
Alignment:
Q  201 tgacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataa 261  Q
    |||||||||| | | |||||||||||||||| | | ||||||| |||||||| ||||||||    
T  34835855 tgacaccacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataa 34835795  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 40991866 - 40991786
Alignment:
Q  202 gacaccacattataacccaaaactttaaggtattaagtttataggtcctctcacttataaagtatccaacatccatttttc 282  Q
    ||||||||||  ||||||||||| || ||| |||  |||||| ||||||||||||||| |||| | |||| |||| |||||    
T  40991866 gacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccacttttc 40991786  T

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