View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14316_high_5 (Length: 286)

Name: NF14316_high_5
Description: NF14316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14316_high_5
NF14316_high_5
[»] chr3 (31 HSPs)
chr3 (115-269)||(6946424-6946578)
chr3 (1-86)||(6946343-6946428)
chr3 (116-237)||(8453807-8453928)
chr3 (112-247)||(6555216-6555351)
chr3 (112-269)||(6735106-6735263)
chr3 (114-246)||(6480734-6480863)
chr3 (112-269)||(6520888-6521045)
chr3 (124-269)||(5279821-5279963)
chr3 (124-269)||(6141454-6141599)
chr3 (124-269)||(6899256-6899401)
chr3 (124-269)||(6258370-6258515)
chr3 (124-269)||(6168059-6168204)
chr3 (124-269)||(6264853-6264998)
chr3 (114-269)||(8588889-8589041)
chr3 (124-269)||(5262945-5263087)
chr3 (124-269)||(6237921-6238066)
chr3 (114-248)||(6449544-6449675)
chr3 (112-214)||(6527683-6527785)
chr3 (35-79)||(6735041-6735085)
chr3 (194-269)||(13271269-13271344)
chr3 (124-269)||(6592069-6592214)
chr3 (124-269)||(6244461-6244606)
chr3 (124-237)||(6722827-6722940)
chr3 (124-269)||(7749170-7749315)
chr3 (185-269)||(6881745-6881829)
chr3 (9-79)||(6555351-6555421)
chr3 (1-75)||(8453707-8453781)
chr3 (124-246)||(8569709-8569831)
chr3 (114-171)||(6729546-6729603)
chr3 (35-77)||(6480867-6480909)
chr3 (124-224)||(6916269-6916369)
[»] scaffold0425 (2 HSPs)
scaffold0425 (112-269)||(8233-8390)
scaffold0425 (9-79)||(8390-8460)
[»] chr1 (1 HSPs)
chr1 (124-269)||(35141086-35141231)
[»] chr2 (1 HSPs)
chr2 (35-76)||(2623658-2623699)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 6946424 - 6946578
Alignment:
Q  115 aggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||    
T  6946424 aggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaacttcctacagccttgcaataagagtgtttgcaaattatac 6946523  T
Q  215 aacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  6946524 aacatacaaatagaatcgggtaaccttgtaatattagtgtgagaaaggtctagat 6946578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 6946343 - 6946428
Alignment:
Q  1 attctgctcttccacaataaaataagttaacgcctgaagattgtttagatttcccatatgctttggcatcttctttatagtaggaa 86  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  6946343 attctgctcttccacaataaaataaggtaaggcctgaagattgtttagatttcctatatgctttggcatcttctttatactaggaa 6946428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 8453807 - 8453928
Alignment:
Q  116 ggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattataca 215  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| | || |||| ||| ||  ||||||||||||||||||| ||    
T  8453807 ggaagtttaagatgacgtaaattgacgagtttggaaaaatttgaagggagctctgtcaattcacaacagccttccagcaagagtgtttgcaaattatgca 8453906  T
Q  216 acatacaaatagaatcaggtaa 237  Q
    |||||||||| | |||||||||    
T  8453907 acatacaaatggtatcaggtaa 8453928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 6555351 - 6555216
Alignment:
Q  112 acaaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaatta 211  Q
    |||||| || ||||||||||||||||||| |||||| || ||||||||||||||||| ||||| | |  ||||||||  || ||||||||||||||||||    
T  6555351 acaagggagctcaagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgataacagtcttttaacaagagtgtttgcaaatta 6555252  T
Q  212 tacaacatacaaatagaatcaggtaaccttgtaata 247  Q
    |||||||||||||| | ||||||||| ||| |||||    
T  6555251 tacaacatacaaatggtatcaggtaagcttttaata 6555216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 6735106 - 6735263
Alignment:
Q  112 acaaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaatta 211  Q
    |||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||| | || |||  |||  || ||||||||||| ||||||    
T  6735106 acaagggagttcaagatgacataaattgacgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaatta 6735205  T
Q  212 tacaacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    |||||||||||||| | ||||||||| ||| |||| | | |||  |||||||||||||    
T  6735206 tacaacatacaaatggtatcaggtaagcttctaatcttagtgtatgaaaggtctagat 6735263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 6480863 - 6480734
Alignment:
Q  114 aaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattata 213  Q
    |||| |||||||||||||||||||||| |||||| || ||||||||||||||||| ||||| |    |||  ||||||| |||| |||||||||||||||    
T  6480863 aagggagttcaagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaatt---cacacccttgcaacaagattgtttgcaaattata 6480767  T
Q  214 caacatacaaatagaatcaggtaaccttgtaat 246  Q
    ||||||||||||   ||||||||| ||||||||    
T  6480766 caacatacaaatgctatcaggtaagcttgtaat 6480734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 6521045 - 6520888
Alignment:
Q  112 acaaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaatta 211  Q
    |||||| || ||||||||||||||||||| |||||| || ||||||||||||||||| ||||| | |   ||| |||  || ||||||||||| ||||||    
T  6521045 acaagggagctcaagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgatggcagccttttaacaagagtgtttgtaaatta 6520946  T
Q  212 tacaacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    |||| ||||||||| | ||||||||| |||| ||| | | ||| ||||||||||||||    
T  6520945 tacagcatacaaatggtatcaggtaagcttgcaatcttattgtaagaaaggtctagat 6520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 5279821 - 5279963
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    |||||||||||||||||| |||||  | ||||||||||||||||| |||||    |||||  || ||||||||||||| |||||||||||||||| ||||    
T  5279821 aagatgacgtaaattgacaagtttgtaaaaatttgaagggagctcagtcaat---ctacatcctagcaataagagtgtctgcaaattatacaacacacaa 5279917  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || ||||||||||  ||||||||   | ||| ||||||||||||||    
T  5279918 atggaatcaggtaggcttgtaattccagtgtaagaaaggtctagat 5279963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6141454 - 6141599
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||||||||||||||||||||||  | |||||||| |||||||| ||||| |||  ||| |||| || |||||| || ||||||||||||| | |||||    
T  6141454 aagatgacgtaaattgacgagtttgcaaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaattatacagcttacaa 6141553  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || |||| |||||| |||||||| |   ||| ||||||||||||||    
T  6141554 atggaattaggtaagcttgtaatctccgtgtaagaaaggtctagat 6141599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6899256 - 6899401
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||||||||| ||||||||||||  | |||| |||||||||||| ||||  |||  |||  |||||| ||||||||| ||||||||||||| |||||||    
T  6899256 aagatgacgtagattgacgagtttgcaaaaatctgaagggagctcagtcagtttaaaacaaccttgcagtaagagtgtctgcaaattatacagcatacaa 6899355  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || ||||||||||| |||| ||| |   ||| ||||||||||||||    
T  6899356 atggaatcaggtaagcttgcaatctcggtgtaagaaaggtctagat 6899401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6258370 - 6258515
Alignment:
Q  124 aagatgacgtaaattgacgagttt-tgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacataca 222  Q
    |||||||| |||||||| ||| || ||| |||||||| |||||||| ||||  |||  ||| |||| || ||||||||| ||||||||||||||||||||    
T  6258370 aagatgacataaattgatgagattgtga-aaatttgatgggagctcagtcagtttaaaacattcttccagtaagagtgtatgcaaattatacaacataca 6258468  T
Q  223 aatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    ||| ||||||||||| |||||||| |   ||| ||||||||||||||    
T  6258469 aatggaatcaggtaaacttgtaatctcggtgtaagaaaggtctagat 6258515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6168059 - 6168204
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||||||||||||||| ||||||    |||||||| |||||||| ||||| |||  ||| |||| || |||||| || ||||||||||||| |||||||    
T  6168059 aagatgacgtaaattgatgagtttgccaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagcgtatgcaaattatacagcatacaa 6168158  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || |||| |||||| |||||||| |   ||| ||||||||||||||    
T  6168159 atggaattaggtaagcttgtaatgtcggtgtaagaaaggtctagat 6168204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6264853 - 6264998
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||||||||||||||||||||||  | |||||||| |||||||| ||||| |||  ||| |||| || |||||| || |||||| |||||| | |||||    
T  6264853 aagatgacgtaaattgacgagtttgcaaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaactatacagcttacaa 6264952  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || |||| |||||| |||||||| |   ||| ||||||||||||||    
T  6264953 atggaattaggtaagcttgtaatctctgtgtaagaaaggtctagat 6264998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 8588889 - 8589041
Alignment:
Q  114 aaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattata 213  Q
    |||| |||| |||||| |||||||||| |||||| || |||||||||||||||||| | |  |||| || ||  | ||| ||||||||||| ||||||||    
T  8588889 aagggagtttaagatggcgtaaattgatgagtttggaaaaatttgaagggagctctctgatgttac-accgt--tccaacaagagtgtttgtaaattata 8588985  T
Q  214 caacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    |||||||||||| | ||||||||| ||||||||   | ||| ||||||||||||||    
T  8588986 caacatacaaatggtatcaggtaagcttgtaatcaaagtgtaagaaaggtctagat 8589041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 5262945 - 5263087
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    |||||| |||||||||||||||||  | |||| |||||||||||| ||||| ||||  |   || ||||||||||||| |||||||||||||||| | ||    
T  5262945 aagatggcgtaaattgacgagtttataaaaatctgaagggagctccgtcaatttacatc---ctagcaataagagtgtctgcaaattatacaacacataa 5263041  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || ||||||||||  ||||||||   | ||| ||||||||||||||    
T  5263042 atggaatcaggtaggcttgtaatcccagtgtaagaaaggtctagat 5263087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6237921 - 6238066
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    |||||||||||||||||  |||||  | |||||||| |||||||  ||||| |||  ||| |||| |  |||||| || ||||||||||||||||| |||    
T  6237921 aagatgacgtaaattgataagtttgcaaaaatttgatgggagcttagtcaatttaaaacattcttccggtaagagcgtatgcaaattatacaacatgcaa 6238020  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || |||| |||||| |||||||| | | ||| ||||||||||||||    
T  6238021 atggaattaggtaagcttgtaatttcagtgtaagaaaggtctagat 6238066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 6449675 - 6449544
Alignment:
Q  114 aaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaatt-actacagtcttgcaataagagtgtttgcaaattat 212  Q
    |||| |||||||||||||||| ||||| |||||| || |||||||| ||||| |||| ||| || | | |   ||||||| |||||||||||||||||||    
T  6449675 aagggagttcaagatgacgtagattgatgagtttggaaaaatttgaggggagatctg-caagttgatttc---cttgcaacaagagtgtttgcaaattat 6449580  T
Q  213 acaacatacaaatagaatcaggtaaccttgtaatat 248  Q
    |||||| |||||| | ||||||||| ||||||||||    
T  6449579 acaacacacaaatggtatcaggtaagcttgtaatat 6449544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 6527785 - 6527683
Alignment:
Q  112 acaaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaatta 211  Q
    |||||| || ||||||||||||||||||| |||||| || ||||||||||||||||| ||||| | || |||  ||  ||| ||||| ||||||||||||    
T  6527785 acaagggagctcaagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattcaccacaacctcccaacaagagagtttgcaaatta 6527686  T
Q  212 tac 214  Q
    |||    
T  6527685 tac 6527683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 6735041 - 6735085
Alignment:
Q  35 tgaagattgtttagatttcccatatgctttggcatcttctttata 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  6735041 tgaagattgtttagctttcccatatgctttggcatcttctttata 6735085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 13271344 - 13271269
Alignment:
Q  194 aagagtgtttgcaaattatacaacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |   ||| ||||||||||||||    
T  13271344 aagagcgtatgcaaattatacaacatacaaatggaatcaggtaagcttgtaatctcggtgtaagaaaggtctagat 13271269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 6592214 - 6592069
Alignment:
Q  124 aagatgacgtaaattgacgagttt-tgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacataca 222  Q
    |||||| || ||||||| |||||| ||| |||| ||||||||| || ||||| |||  ||| |||| |||||||| ||||||||||||||||| | ||||    
T  6592214 aagatggcgcaaattgatgagtttgtga-aaatctgaagggagttcggtcaatttaaaacattcttccaataagaatgtttgcaaattatacagcgtaca 6592116  T
Q  223 aatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    ||| |||| |||||| |||| ||| | | | | ||||||||||||||    
T  6592115 aatggaattaggtaagcttgcaatctcagttttagaaaggtctagat 6592069  T

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Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 6244461 - 6244606
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||||||||||||||| ||||||  | |||||||  ||||||||    |  |||  ||| |||| || |||||| || |||||||||||||||||||||    
T  6244461 aagatgacgtaaattgatgagtttgcaaaaatttggcgggagctcaagtagtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaa 6244560  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || |||| |||||| |||||||| |   ||| ||||||||||||||    
T  6244561 atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagat 6244606  T

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Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 6722940 - 6722827
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||| ||||||||||||||||||  ||| || |||||| ||||  ||||| |||   || |||| |||||||||||| ||||||||||| | |||||||    
T  6722940 aagataacgtaaattgacgagtttgtagatatctgaaggtagcttagtcaatttaaagcactcttccaataagagtgtctgcaaattatatagcatacaa 6722841  T
Q  224 atagaatcaggtaa 237  Q
    || |||| ||||||    
T  6722840 atggaattaggtaa 6722827  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 7749170 - 7749315
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    ||||||||||||||||| ||||||  | |||| |||||| ||||| | |||  |   ||| | || ||| |||||||| ||||||||||||| |||||||    
T  7749170 aagatgacgtaaattgatgagtttgcaaaaatctgaaggcagctcagccaatctgaaacattgttccaacaagagtgtctgcaaattatacagcatacaa 7749269  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || ||||  ||||| |||| ||| | | ||||||||||||||||||    
T  7749270 atggaattgggtaagcttgcaatctcagtgtgagaaaggtctagat 7749315  T

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Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 6881745 - 6881829
Alignment:
Q  185 tcttgcaataagagtgtttgcaaattatacaacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    |||| |||||||||||| || |||||||||||||||||||| |||| |||||| |||| ||| | | |||| |||||||| ||||    
T  6881745 tcttccaataagagtgtctgtaaattatacaacatacaaatggaattaggtaagcttgcaatctcagtgtgcgaaaggtccagat 6881829  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 6555421 - 6555351
Alignment:
Q  9 cttccacaataaaataagttaacgcctgaagattgtttagatttcccatatgctttggcatcttctttata 79  Q
    |||||||||||||||| |  || | ||||||||| ||||| |||||||||| ||||||||| |||||||||    
T  6555421 cttccacaataaaatatgacaaggtctgaagattatttagctttcccatattctttggcattttctttata 6555351  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8453707 - 8453781
Alignment:
Q  1 attctgctcttccacaataaaataagttaacgcctgaagattgtttagatttcccatatgctttggcatcttctt 75  Q
    |||||||||||||||||||||||| |  ||    |||||||||||||| |||||| |||||||||||||| ||||    
T  8453707 attctgctcttccacaataaaatatgacaagctttgaagattgtttagctttcccgtatgctttggcatcgtctt 8453781  T

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Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 8569831 - 8569709
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    |||||| ||||||||| | |||||  | |||| |||||||||||  ||||| | |  ||| |||| |||||  |||||||| |||||||||||| |||||    
T  8569831 aagatggcgtaaattggcaagtttgtaaaaatatgaagggagcttggtcaattcagaacattcttccaatattagtgtttgtaaattatacaacttacaa 8569732  T
Q  224 atagaatcaggtaaccttgtaat 246  Q
    || |||||||| |||||| ||||    
T  8569731 atggaatcaggcaaccttttaat 8569709  T

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Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 6729603 - 6729546
Alignment:
Q  114 aaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgt 171  Q
    |||| |||||||||||||||| ||||| |||||| || |||||||||||||| |||||    
T  6729603 aagggagttcaagatgacgtagattgatgagtttggaaaaatttgaagggagatctgt 6729546  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 6480909 - 6480867
Alignment:
Q  35 tgaagattgtttagatttcccatatgctttggcatcttcttta 77  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||    
T  6480909 tgaagactgtttagctttcctatatgctttggcatcttcttta 6480867  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 6916269 - 6916369
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    |||||| ||||| |||||||||||    |||| | |||||||||| ||||| || | ||| |||| |||||||||||| || |||||||| | |||||||    
T  6916269 aagatggcgtaagttgacgagtttgccaaaatctaaagggagctcagtcaatttccaacattcttccaataagagtgtctgtaaattatatatcatacaa 6916368  T
Q  224 a 224  Q
    |    
T  6916369 a 6916369  T

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Target: scaffold0425 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 8390 - 8233
Alignment:
Q  112 acaaggaagttcaagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaatta 211  Q
    |||||| || ||||||||||||||||||| |||||| || ||||||||||||||||| ||||| | || |||  |||  || ||||||||||| ||||||    
T  8390 acaagggagctcaagatgacgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaatta 8291  T
Q  212 tacaacatacaaatagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    |||||||||||||| | ||||||||| ||| |||| | | |||  |||||||||||||    
T  8290 tacaacatacaaatggtatcaggtaagcttctaatcttagtgtatgaaaggtctagat 8233  T

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Target: scaffold0425; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 8460 - 8390
Alignment:
Q  9 cttccacaataaaataagttaacgcctgaagattgtttagatttcccatatgctttggcatcttctttata 79  Q
    |||||||||||||||| |  |  | ||||||||| ||||| |||||||||| ||||||||| |||||||||    
T  8460 cttccacaataaaatatgacatggtctgaagattatttagctttcccatattctttggcattttctttata 8390  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 35141231 - 35141086
Alignment:
Q  124 aagatgacgtaaattgacgagttttgagaaatttgaagggagctctgtcaaattactacagtcttgcaataagagtgtttgcaaattatacaacatacaa 223  Q
    |||||||| |||||||| ||||||    |||||||| ||||||||  ||   |||  ||| |||| || |||||| || |||||||||||||||||||||    
T  35141231 aagatgacataaattgatgagtttgcgaaaatttgatgggagctcaatcggtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaa 35141132  T
Q  224 atagaatcaggtaaccttgtaatatgactgtgagaaaggtctagat 269  Q
    || |||| |||||| |||||||| |   ||| ||||||||||||||    
T  35141131 atggaattaggtaagcttgtaatctcggtgtaagaaaggtctagat 35141086  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 2623699 - 2623658
Alignment:
Q  35 tgaagattgtttagatttcccatatgctttggcatcttcttt 76  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  2623699 tgaagattgtttagctttcccatatgctttgacatcttcttt 2623658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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