View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14316_high_6 (Length: 256)
Name: NF14316_high_6
Description: NF14316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14316_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 6810492 - 6810721
Alignment:
| Q |
12 |
aaggtatgtggaatttgagatcagccatatgggaaagacaatatcttggacaacagttgtatctaagagtgtggaatgcacaacgtactgcagccaatga |
111 |
Q |
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| T |
6810492 |
aaggtatgtggaatttgagatcagccatatgggaaagacaatatcttggacaacagttgtatctaagagtgtggaatgcacaacgtactgcagccaatga |
6810591 |
T |
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| Q |
112 |
atatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagagtatacgttttcaaccatttatttattggtgttttattcta |
211 |
Q |
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| T |
6810592 |
atatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagagtatacgttttcaaccatttatttattggtgttttattcta |
6810691 |
T |
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| Q |
212 |
gtcatgagagcttgactacagctagatttt |
241 |
Q |
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| T |
6810692 |
gtcatgagagcttgactacagctagatttt |
6810721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 6799434 - 6799657
Alignment:
| Q |
12 |
aaggtatgtggaatttgagatcagccatatgggaaagacaatatcttggacaacagttgtatctaagagtgtggaatgcacaacgtactgcagccaatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6799434 |
aaggtatgtggaatttgagatcagccatatgggaaagacaatatcttggacaacagttgtatctaagagtgtggaatgcacaacgtactgcagccaatga |
6799533 |
T |
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| Q |
112 |
atatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagagtatacgttttcaaccatttatttattggtgttttattcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |
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| T |
6799534 |
atatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagagtatacgttttcaaccattcatt------ggtttcattcta |
6799627 |
T |
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| Q |
212 |
gtcatgagagcttgactacagctagatttt |
241 |
Q |
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| T |
6799628 |
gtcatgagagcttgactacaactagatttt |
6799657 |
T |
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