View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14316_low_3 (Length: 393)
Name: NF14316_low_3
Description: NF14316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14316_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 87 - 386
Target Start/End: Original strand, 44532107 - 44532409
Alignment:
| Q |
87 |
aaaaggcatatatcttattctcaagtgtatgagacaataattcacttatcttagattttgagtcataagataattcatgtcatttgaatcatctaagtta |
186 |
Q |
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| T |
44532107 |
aaaagtcatatatcttattctcaagtgtatgagacaataattcacttatcttagattttgagtcataagataattcatgtcatttgaatcatctaagtta |
44532206 |
T |
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| Q |
187 |
aattcttctatctgaatcttgatgcatgttgaactcaatcatagtttataattttattaaccaaattaattaattttaatgctgagttcatcttcttcaa |
286 |
Q |
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| T |
44532207 |
aattcttctatctgaatcttgatgcatgttgaactcaatcatagtttataattttattaaccaaattaattaattttaatgctgagttcatcttcttcaa |
44532306 |
T |
|
| Q |
287 |
cnnnnnnnaggttaatttcatccttccatctaatttttattactttgtgtgtttcttatttattggtcactcttttaggtatgaac---tacctagcttc |
383 |
Q |
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| T |
44532307 |
ctttttttaggttaatttcatccttccatctaatttttattactttgtgtgtttcttatttattggtcactcttttaggtatgaactaatacctagcttc |
44532406 |
T |
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| Q |
384 |
atg |
386 |
Q |
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| T |
44532407 |
atg |
44532409 |
T |
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