View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14316_low_4 (Length: 373)
Name: NF14316_low_4
Description: NF14316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14316_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 34826386 - 34826037
Alignment:
| Q |
8 |
ataatactccaatatacacacatgcactagaaacatcaacaaaaattgatgtatttatataatacttctagatacactcattagatatatcaacaaaaat |
107 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
34826386 |
ataacactgcaatatacacac--gcactagaaacatcaacaaaaattgatgtatttatataatacttctatatatacgcattagatatatcaacaaaaat |
34826289 |
T |
|
| Q |
108 |
tgatgtatttgatagaataattttcaatataaattaaatacataaatttttattgatatatttgtctgttataaaaaagatcttaaaaaatattagagta |
207 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
34826288 |
taatgtatttgataaaataattttcaatataaattaaatacataaatttttattgatatatttgtctgttataaaaaagaccataaaaaatattagagta |
34826189 |
T |
|
| Q |
208 |
aatgattattttaaaatccatccatattaaataagca-ttctcatataaatagtttgaaaattacttacttaatcttataatctttaggcaaattaccat |
306 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34826188 |
aatgattactttaaaatccatccatattaaataagcatttctcatataaatagtttgaaaattacttacttaatcttataatctttaggcaaattactat |
34826089 |
T |
|
| Q |
307 |
tgagaatgggttttataccataagaagcattagatactctcattgcacatga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34826088 |
tgagaatgggttttataccataagaagcattagatactctcattgcacatga |
34826037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 41004216 - 41004272
Alignment:
| Q |
133 |
aatataaattaaatacataaatttttattgatatatttgtctgttataaaaaagatc |
189 |
Q |
| |
|
||||||||| | ||||||||||||||||| | |||||||||| |||||||| |||| |
|
|
| T |
41004216 |
aatataaatcacatacataaatttttatttacatatttgtctcgtataaaaaggatc |
41004272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University