View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_high_1 (Length: 749)
Name: NF14317_high_1
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 17 - 742
Target Start/End: Complemental strand, 3215682 - 3214958
Alignment:
| Q |
17 |
catactccaccgcctccgccgcatccaaccgatgcccaaacttctccggtggtgacgaacgcttttccgctccaatcctttgtagatgacgatgcttcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215682 |
catactccaccgcctccgccgcatccaaccgatgcccaaacttctccggtggtgacgaacgcttttccgctccaatcctttgtagatgacgatgcttcag |
3215583 |
T |
|
| Q |
117 |
ttcgctccaacttcgtcttctctatgaagatttatgagaagctgaacgagaaaaattccctcgttgtttggtgtcatcaagttgaaccgtatgtgaatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
3215582 |
ttcgctccaacttcgtcttctctatgaagatttatgagaagctgaacgagaaaaattccctcgttgtttggtgtcaacaagttgaaccatatgtgaatgc |
3215483 |
T |
|
| Q |
217 |
aaacaatctcgatgaatatcttgttgctccaatcattccgccgcgttttctcactgcgcaagatcgcgctactggaaaactcaatcttgagtaccgtcat |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215482 |
aaacaatctcgatgaatatcttgttgctccgatcattccgccgcgttttctcactgcgcaagatcgcgctactggaaaactcaatcttgagtaccgtcat |
3215383 |
T |
|
| Q |
317 |
tggcgtctcaaagaccagatgctactgtcctggcttctatctactctttctggtggtgcgtgtcgttggttcttcgcatgcgtataaactctagaacaaa |
416 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215382 |
tggcatctcaaagaccagatgctactgtcctggcttctatctactctttctggtggtgcgtgtcgttggttcttcgcatgcgtataaactctagaacaaa |
3215283 |
T |
|
| Q |
417 |
cttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgtttgataatcgtacggtacaagagtat |
516 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
3215282 |
cttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacctcgtttgataatcgtacggtgcaagagtat |
3215184 |
T |
|
| Q |
517 |
ctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatg |
616 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215183 |
ctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatg |
3215084 |
T |
|
| Q |
617 |
gatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaa |
716 |
Q |
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| T |
3215083 |
gttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaa |
3214984 |
T |
|
| Q |
717 |
gttcaagaagaaaactcttgatgatg |
742 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3214983 |
gttcaagaagaaaactcttgatgatg |
3214958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 260 - 743
Target Start/End: Complemental strand, 32460962 - 32460471
Alignment:
| Q |
260 |
cgttttctcactgcgcaagatcgcgctactggaaaactcaatcttgagtaccgtcattggcgtctcaaagaccagatgctactgtcctggcttctatcta |
359 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||||||||||| ||||| || || ||||||||||| || |||||||| ||||||||||||| ||||| |
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| T |
32460962 |
cgttttctcactgcacaagattgcgccaccggaaaactcaatcctgagtttcgccaatggcgtctcaaggatcagatgctcctgtcctggcttcaatcta |
32460863 |
T |
|
| Q |
360 |
ctctttctggtg--------gtgcgtgtcgttggttcttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaa |
451 |
Q |
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| ||||| ||| | ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
32460862 |
ccctttccagtgagattcttgcacgtgttgttggttcttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaa |
32460763 |
T |
|
| Q |
452 |
ggcaagacaacattcgtgttgaattgcgcgctacctcgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgc |
551 |
Q |
| |
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|||||| || | ||||||||| |||| |||| || ||||||||||||||||||| ||| |||| |||| | ||||||| | || || |||||||| |
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| T |
32460762 |
ggcaaggcagt-tacgtgttgaactgcgttctacttctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgc |
32460664 |
T |
|
| Q |
552 |
tt-caattgatgatccaattcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaa |
650 |
Q |
| |
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|| | |||| ||||||| |||| | | |||||| |||||||| ||||| |||||||||||||| | ||||||||||| || || |||||||| || || |
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| T |
32460663 |
tttccattggtgatccagttcccattactcagcatttagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaa |
32460564 |
T |
|
| Q |
651 |
gtttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatgt |
743 |
Q |
| |
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||||| |||||| || |||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
32460563 |
atttgacactattgatattgatgaggtagagtctctgttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgatgt |
32460471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 393 - 725
Target Start/End: Complemental strand, 36399779 - 36399448
Alignment:
| Q |
393 |
catgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgttt |
492 |
Q |
| |
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||||||||| |||| | | | ||||||||| | |||||||| || ||||||| ||| ||||| | |||| || |||||||| |||| |||| || || |
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| T |
36399779 |
catgcgtatgaactttgggataaacttgtggcatattttcacaaacagatgcgtgcgaaggcgcgtcaac-ttagtgttgaactgcgttctacttctctt |
36399681 |
T |
|
| Q |
493 |
gataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatg |
592 |
Q |
| |
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| |||| ||||||||| || ||||| |||||| ||| ||||| | || ||||| || || || | |||||| ||||||| ||||| || || |||| |
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| T |
36399680 |
gcaaatcttacggtacaggattatcttcttcgtattcgtgatcttgttgataatctagcctctataggagatccagttcctgttaatcaacatttggatg |
36399581 |
T |
|
| Q |
593 |
ttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaat |
692 |
Q |
| |
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| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || ||||||||||||||| | || || ||||| ||||| || | |
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| T |
36399580 |
tgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttcttct |
36399481 |
T |
|
| Q |
693 |
tgctcatgaaactcgtcttgacaagttcaagaa |
725 |
Q |
| |
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|||||||||||| |||||||| || |||||||| |
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| T |
36399480 |
tgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 725
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
652 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
725 |
Q |
| |
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||||||||||||||||| || || ||||| ||||| || ||||||||||||| |||||||| || |||||||| |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 725
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
569 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacat |
668 |
Q |
| |
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||||||| ||||| || || ||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
|
| Q |
669 |
agatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
725 |
Q |
| |
|
|| || ||||| ||||| || || |||||||||| |||||||| || |||||||| |
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|
| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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