View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_high_11 (Length: 340)
Name: NF14317_high_11
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 10563469 - 10563722
Alignment:
| Q |
1 |
atatatggtagaataatattttgaaggattttaatgtgcttgagttaatgtgatgtgagaaccgaacctggttttggtaggagcattgcactatttctat |
100 |
Q |
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| T |
10563469 |
atatatggtagaataatattttgaaggattttaatgtgcttgagttaatgtgatgtgagaaccgaacctggttttggtaggagcattgcattatttctat |
10563568 |
T |
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| Q |
101 |
gccaccaaagctagagccaaaaacatgctttaacttggtataatatagtatatatttcttaaaacaaaggtattttatttatttatagatgatgaatacg |
200 |
Q |
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| T |
10563569 |
gccaccaaagctagagccaaaaacatgctttaacatggtataatatagtatatatgtcttaaaagaaaggtattttatttatttatagatgatgaatacg |
10563668 |
T |
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| Q |
201 |
agtataagttgtactaaactcaccaaatctgaaacgacccaaaataatataagt |
254 |
Q |
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| T |
10563669 |
agtataagttgtactaaactcaccaagtctgaaacgacccaaaataatataagt |
10563722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 39945685 - 39945756
Alignment:
| Q |
56 |
tgagaaccgaacctggttttggtaggagcattgcactatttctatgccaccaaagctagagccaaaaacatg |
127 |
Q |
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| T |
39945685 |
tgagaatcgaacttggttttggcaagatcatggcactatttctttgccaccaaagcaagagccaaaaacatg |
39945756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 23097043 - 23096979
Alignment:
| Q |
63 |
cgaacctggttttggtaggagcattgcactatttctatgccaccaaagctagagccaaaaacatg |
127 |
Q |
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| T |
23097043 |
cgaacttggttttggcaagatcatggcactatttctttgccaccaaagcaagagccaaaaacatg |
23096979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 1494091 - 1494155
Alignment:
| Q |
63 |
cgaacctggttttggtaggagcattgcactatttctatgccaccaaagctagagccaaaaacatg |
127 |
Q |
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||||| ||||||||| | || ||| ||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
1494091 |
cgaacttggttttggcaagatcatagcactatttctttgcccccaaagcaagagccaaaaacatg |
1494155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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