View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14317_high_21 (Length: 245)

Name: NF14317_high_21
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14317_high_21
NF14317_high_21
[»] chr4 (9 HSPs)
chr4 (131-234)||(9239423-9239526)
chr4 (58-99)||(9238848-9238889)
chr4 (170-233)||(9164959-9165020)
chr4 (172-234)||(9181220-9181280)
chr4 (135-172)||(9261248-9261285)
chr4 (171-234)||(9156712-9156773)
chr4 (172-226)||(9261312-9261364)
chr4 (135-172)||(9165048-9165085)
chr4 (135-172)||(9181153-9181190)
[»] scaffold1064 (1 HSPs)
scaffold1064 (135-234)||(2750-2849)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 9239423 - 9239526
Alignment:
Q  131 agtgaatattgttgcttattttgaatttcttattattttaggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9239423 agtgaatattgttgcttattttgaatttcttattattttaggagagaaacgttgttattgagaaaaataaaaagcttgagcccaagaactggtatgtcat 9239522  T
Q  231 tcat 234  Q
    ||||    
T  9239523 tcat 9239526  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 9238848 - 9238889
Alignment:
Q  58 gatcatcctaagttagttagttataactaaccaacaagataa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9238848 gatcatcctaagttagttagttataactaaccaacaagataa 9238889  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 9165020 - 9164959
Alignment:
Q  170 aggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattca 233  Q
    |||||||||| ||||||| |||||||||||||||||||||  ||||||| ||||||||||||||    
T  9165020 aggagagaaatgatgttaatgagaaaaataaaaagcttga--gcaagaagtggtatgtcattca 9164959  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 9181220 - 9181280
Alignment:
Q  172 gagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat 234  Q
    |||||||| ||||||| |||||| ||||||||||||||  ||||||| |||||||||||||||    
T  9181220 gagagaaatgatgttaatgagaataataaaaagcttga--gcaagaagtggtatgtcattcat 9181280  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 9261248 - 9261285
Alignment:
Q  135 aatattgttgcttattttgaatttcttattattttagg 172  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9261248 aatattgttgcttattttgaatttctttttattttagg 9261285  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 9156712 - 9156773
Alignment:
Q  171 ggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat 234  Q
    ||||| ||| |||| || ||||||||||||||||||| |||  |||||||||||||||||||||    
T  9156712 ggagataaatgatggtaatgagaaaaataaaaagcttcagc--aagaactggtatgtcattcat 9156773  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 9261312 - 9261364
Alignment:
Q  172 gagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatg 226  Q
    |||||| |||||||||||||||||||| |||| |||||  |||||||||||||||    
T  9261312 gagagagacgatgttattgagaaaaatgaaaatcttga--gcaagaactggtatg 9261364  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 9165085 - 9165048
Alignment:
Q  135 aatattgttgcttattttgaatttcttattattttagg 172  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  9165085 aatattgttgcttattttgatgttcttattattttagg 9165048  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 9181153 - 9181190
Alignment:
Q  135 aatattgttgcttattttgaatttcttattattttagg 172  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  9181153 aatactgttgcttattttgaagttcttattattttagg 9181190  T

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Target: scaffold1064 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 2750 - 2849
Alignment:
Q  135 aatattgttgcttattttgaatttcttattattttaggagagaaacgatgttattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2750 aatattgttgcttattttgaatttcttattattttaggagagaaaggatgatattgagaaaaataaaaagcttgagcgcaagaactggtatgtcattcat 2849  T

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