View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_high_4 (Length: 433)
Name: NF14317_high_4
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 31959860 - 31960265
Alignment:
| Q |
20 |
agtgtctccaaaaccaaagtgggtgcaaaccgtgtgatcacagaatctgttggatcacaagttgttggacagtttgttgaacctgatgtgcctatgaatg |
119 |
Q |
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| T |
31959860 |
agtgtctccaaaaccaaagtgggtgcaaaccgtgtgatcacagaatctgttggatcacaagttgttggacagtttgttgaacctgatgtgcctatgaatg |
31959959 |
T |
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| Q |
120 |
atcctggtttggttttggacaagaatgctataaccattggagaggcactggaagcttctgctttgagtcaagccggtgataagccattggatcagagtga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31959960 |
atcctggtttggttttggacaagaatgctataaccattggagaggcactggaagcttctgctttgagtcaagccggtgataagccgttggatcagagtga |
31960059 |
T |
|
| Q |
220 |
tgctgctgctatacaggccgcggaaatgagagctaccggaaagaatcatactgagcccggtgggttgggtgccatagctcagtcagcagctaccagaaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31960060 |
tgctgctgctatacaggccgcggaaatgagagctaccggaaagaatcatactgagcccggtgggttgggtgccatagctcagtcagcagctaccagaaat |
31960159 |
T |
|
| Q |
320 |
actcgtactctgcctgatctgcagaaaactacattgggtgatgtcgtatcggtaacttttcttaccttgtgatattgttttatgagtcatattaatcgat |
419 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31960160 |
actcgtactatgcctgatctgcagaaaactacattgggtgatgtcgtatcggtaacttttcttaccttgtgatattgttttatgcgtcatattaatcgat |
31960259 |
T |
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| Q |
420 |
attctt |
425 |
Q |
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||||| |
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| T |
31960260 |
gttctt |
31960265 |
T |
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