View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14317_high_5 (Length: 431)

Name: NF14317_high_5
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14317_high_5
NF14317_high_5
[»] chr3 (19 HSPs)
chr3 (5-415)||(679758-680168)
chr3 (5-415)||(747676-748090)
chr3 (10-189)||(9595182-9595361)
chr3 (6-163)||(9562512-9562672)
chr3 (13-278)||(2491317-2491587)
chr3 (11-278)||(2475887-2476159)
chr3 (10-279)||(2474346-2474617)
chr3 (114-262)||(755292-755445)
chr3 (114-278)||(7334931-7335100)
chr3 (114-278)||(9566482-9566651)
chr3 (10-79)||(2659683-2659752)
chr3 (11-83)||(2630771-2630843)
chr3 (14-278)||(7443554-7443823)
chr3 (331-406)||(2630430-2630503)
chr3 (122-278)||(7325065-7325226)
chr3 (10-80)||(755176-755246)
chr3 (10-64)||(9566378-9566432)
chr3 (256-300)||(2634861-2634905)
chr3 (13-83)||(2644902-2644972)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Original strand, 679758 - 680168
Alignment:
Q  5 aagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679758 aagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttg 679857  T
Q  105 ttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacaga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  679858 ttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacaga 679957  T
Q  205 ggcatcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  679958 ggcatcgaagttggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggtggcggagatgttatggttccag 680057  T
Q  305 ccgtatggacgatgatgtcgtttgggtcttcctccccatcgcttctaccatccgccatttctctacaaaactagggtttgagttcccaatggtatatttg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  680058 ccgtatggacgatgatgtcgtttgggtcttcctccccatcgcttctaccatccgccatttctctacaaaactagggtttgagttcccaatggtatatttg 680157  T
Q  405 agggtcattca 415  Q
    |||||||||||    
T  680158 agggtcattca 680168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 5 - 415
Target Start/End: Original strand, 747676 - 748090
Alignment:
Q  5 aagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttg 104  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  747676 aagagtattaggagggtaaagttgtgtatgtgtaacaacgatagaagtagataaaaccgaggggattggagaaacatactcaactaactcagccaagttg 747775  T
Q  105 ttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacaga 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  747776 ttccaagaggttatcatgaggtggtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacaga 747875  T
Q  205 ggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggt 299  Q
    |||||||||||||     ||||||||||||||| ||||||||||| ||||||||  ||||||||  ||||||||||||||||||||||||||||||||||    
T  747876 ggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaagtggcggcggagatgttatggt 747975  T
Q  300 tccagccgtatggacgatgatgtcgtttgggtcttcctccccatcgcttctaccatccgccatttctctacaaaactagggtttgagttcccaatggtat 399  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||  | |||||||    
T  747976 tccagccgtatggacgatgatgtcgtttggatcttcctcctcatcgcttctaccctccgccatttctctacaaaattagggtttgagtt-tcgatggtat 748074  T
Q  400 atttgagggtcattca 415  Q
    ||||||||||||||||    
T  748075 atttgagggtcattca 748090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 9595182 - 9595361
Alignment:
Q  10 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttcca 109  Q
    |||||||||||||||||||||| |||||||||| ||||||||| || ||||  ||| ||||||||||||||||   |||||| |||||||||||||||      
T  9595182 tattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggagaatcatatagaactaaatcagccaagttgttcat 9595281  T
Q  110 agaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat 189  Q
    ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  9595282 agaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatcagaaataagagaat 9595361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 9562512 - 9562672
Alignment:
Q  6 agaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc---caagt 102  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | ||||||||||  |||||| || ||| |||||| |   | |      
T  9562512 agaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgggaaatcatgctgaacaaactcaccacgcgaaa 9562611  T
Q  103 tgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc 163  Q
    ||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||    
T  9562612 tgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc 9562672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 2491587 - 2491317
Alignment:
Q  13 taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaaga 112  Q
    |||||||||||||||| || ||||||| |||||||||||| || |||| |||||| ||||| |||||||  | ||| |||||| ||||||||||    ||    
T  2491587 taggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattggggaatcatgatgaaccaactcacccaagttgttttttga 2491488  T
Q  113 ggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcga 212  Q
    ||||| |||||||| ||||||||| ||||| |||||||| ||||| ||||||||| | ||||||| ||| | |||||       |||||| |||||||||    
T  2491487 ggttaccatgaggtggtggcgctttgttgacaattgaagatgcttttttgcgaatttaggatcagaaattaaagaattgaaaaacttacaaaggcatcga 2491388  T
Q  213 agttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 278  Q
    || ||     ||||||| |  |||| |||||  ||||||||||| |||||||| ||  ||||||| |||||    
T  2491387 agctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaagagttggaag 2491317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 2476159 - 2475887
Alignment:
Q  11 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaa 110  Q
    ||||||||||||||||||||| |||||||||||||| ||||| || || |  || |||||||| |||||||||  ||||||||||    |  |||| | |    
T  2476159 attaggagggtaaagttgtgtctgtgtaacaacggttgaagtagaaaatacggatgggattggcgaatcatacagaactaactcacgtgatatgttacga 2476060  T
Q  111 gaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatc 210  Q
     |  ||  |||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| |||||||||||       |||||| ||||| |    
T  2476059 cattttcgcatgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcacc 2475960  T
Q  211 gaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 278  Q
    |||| ||     |||||||||  || ||||||   ||||||||||| |||||||| ||| |||||||||||||    
T  2475959 gaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag 2475887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 2474617 - 2474346
Alignment:
Q  10 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttcca 109  Q
    |||||||||||||||||||||| ||| |||  |   ||||  | || |||| |||||| ||||| |||||||||| |||  ||||| | |||| ||| |     
T  2474617 tattaggagggtaaagttgtgtctgtataatga---tagacttagaaaaaagcgagggtattggggaatcatactgaacgtactcacctaagtagttgct 2474521  T
Q  110 agaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcat 209  Q
    ||| |||| |||||||| |||||||||  |||||||||||||||| |||||||||||| | ||||  | ||| | |||||       ||||||||||||     
T  2474520 agatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcac 2474421  T
Q  210 cgaagtt-----ggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagt 279  Q
    ||||| |     |||||||||| ||||| ||||| |||||||||||| |||| ||| ||| ||||||||||||||    
T  2474420 cgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt 2474346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 114 - 262
Target Start/End: Original strand, 755292 - 755445
Alignment:
Q  114 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 213  Q
    |||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||       |||||||||||| || |    
T  755292 gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca 755391  T
Q  214 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga 262  Q
    | ||     ||||||||||||||| |||||  ||||||||||| ||||||||||    
T  755392 gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga 755445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 278
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
Q  114 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 213  Q
    |||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||  |||| |||||       ||||||||| |||||||    
T  7334931 gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa 7335030  T
Q  214 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 278  Q
    | ||     ||||||| |  |||| |||||  ||||||||||| |||||||| ||  ||||||| |||||    
T  7335031 gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag 7335100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 278
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
Q  114 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 213  Q
    |||| ||||||||  |||||||| ||||| |||||||| || || ||||||||| ||||||||| |||||||||||       ||| |||||||| ||||    
T  9566482 gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa 9566581  T
Q  214 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 278  Q
    | ||     ||||||| ||||||| |||||  ||||||||||| | |||||||||| ||||||| |||||    
T  9566582 gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag 9566651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 2659683 - 2659752
Alignment:
Q  10 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatc 79  Q
    ||||||||  |||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||||    
T  2659683 tattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaattgaagggattggagaatc 2659752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 2630843 - 2630771
Alignment:
Q  11 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac 83  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| ||||||||||||||||||    
T  2630843 attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatac 2630771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 7443554 - 7443823
Alignment:
Q  14 aggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagag 113  Q
    |||||||| ||||||||| |||||||||   |||||||| || || | ||| ||||||||||||||||    ||| || |||     |||||||| ||||    
T  7443554 aggagggtcaagttgtgtttgtgtaacagacgtagaagtagaaaacaccgatgggattggagaatcatgtaaaacaaaatcatgtctgttgttcctagag 7443653  T
Q  114 gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa 213  Q
    |||| |||||||  |||  |||| | ||| ||||||| ||||||||| |||||  | ||||||| ||| | |||||       |||||||||||| ||||    
T  7443654 gttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcaccgaa 7443753  T
Q  214 gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 278  Q
    ||||     ||||||| |  |||| ||| | ||||||||||||||||| ||||||| |||||||||||||    
T  7443754 gttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag 7443823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 2630503 - 2630430
Alignment:
Q  331 tcttcctccccatcgcttctaccatccgccatttctctacaaaactagggtttgagttcccaatggtatatttgag 406  Q
    ||||| ||||| ||||||||||| ||||||||||||||  |||| |||||||||| |||  |||||||||||||||    
T  2630503 tcttcttccccgtcgcttctaccctccgccatttctct--aaaattagggtttgaattctaaatggtatatttgag 2630430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
Q  122 gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- 217  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | |||||       |||||||||||| ||||| ||        
T  7325065 gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg 7325164  T
Q  218 -gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag 278  Q
     ||||||| |  |||| ||| | |||||||||||| | |||||||||  ||||||| |||||    
T  7325165 agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag 7325226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 755176 - 755246
Alignment:
Q  10 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatca 80  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| ||||||    
T  755176 tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatca 755246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 9566378 - 9566432
Alignment:
Q  10 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcga 64  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| |||||||||||    
T  9566378 tattgggagggtaaagttgtgtctgtgtaaaaaccgtagaagtagataaaatcga 9566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
Q  256 acatcgaagagaagagtgggaagtggcggcggagatgttatggtt 300  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||    
T  2634905 acatcgaacggaagagtcggaagtggcggcggagatgttatggtt 2634861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 2644902 - 2644972
Alignment:
Q  13 taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac 83  Q
    ||||| ||||||||||||| |||||||||| ||||||||| || |||   || |||||||| |||||||||    
T  2644902 taggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatcatac 2644972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University