View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_high_7 (Length: 380)
Name: NF14317_high_7
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 9068428 - 9068058
Alignment:
| Q |
15 |
aacatataccttttaaattaagttatgttctcttgtcnnnnnnnnttaagttatgttcaatggcgaaccttcgaagaataaactctggaagagagaaaca |
114 |
Q |
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| T |
9068428 |
aacatataccttttaaattaagttatgttctcttgtcaaaaaaaattaagttatgttcaatggcgaaccttcgaagaataaactctggaagagagaaaca |
9068329 |
T |
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| Q |
115 |
gcttctgatatagaaattagtagtgcatgattaggaacaactcaaatcgaaatttgcatctac----atcatcaannnnnnnnnnnnnn-agaagaaact |
209 |
Q |
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| T |
9068328 |
gcttctgatatagaaattagtagtgcatgattaggaacaactcaaatcgaaatttgcatctacgtacatcatcaatttttatttttttttaaaagaaact |
9068229 |
T |
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| Q |
210 |
aatatttagtcgactcattctatatttagagaagagtttgaaattttaaatggcacatagcaacatccatcattatcacatgataaaaataataaaattt |
309 |
Q |
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| T |
9068228 |
aatatttagtcgactcattctatatttagagaagagtttgaaattttaaatggcacatagcaacatccatcattatcacatgataaaaataataaaattt |
9068129 |
T |
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| Q |
310 |
taggaaaaggttaaagttcaactgggggtgcagttggcttcctcaccgctaaaatacatattttcatcagc |
380 |
Q |
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| T |
9068128 |
taggaaaaggttaaagttcaactgggggtgcagttggcttcctcaccgctaaaatacatattttcatcagc |
9068058 |
T |
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