View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14317_high_8 (Length: 358)
Name: NF14317_high_8
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 50885821 - 50886076
Alignment:
| Q |
13 |
catcaataactaacaaccacaatgcttgttgttgcttactgccccgctctcactggcattcttcccctcttcccgacgacaatatccccatctcaaaacc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50885821 |
catccataactaacaaccacaatgcttgttgttgcttacctcaccgctctcattggcattcttcccctcttcccgacgacaatatccccatctcaaaacc |
50885920 |
T |
|
| Q |
113 |
ttaaaaccaaaactaactttt-acggacccttcaattccaccagcaccaacctttttgatgttatacctaggacatctatctaccatagaaccttccata |
211 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50885921 |
ttaaaaccaaaactcactttttacggacccttcaattccaccagcgccaacctttttgatgtcatacctaggacatctatctaccatagaaccttccata |
50886020 |
T |
|
| Q |
212 |
tcacttcggacaacactggaagtgaaactgtcatctccctgcttaacaagtccgac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50886021 |
tcacttcggacaacactggaagtgaaactgtcatctccctgtttaacaagtccgac |
50886076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 198 - 346
Target Start/End: Original strand, 50886077 - 50886225
Alignment:
| Q |
198 |
tagaaccttccatatcacttcggacaacactggaagtgaaactgtcatctccctgcttaacaagtccgacacaatctttttaaaaagccatttagactct |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
50886077 |
tagaaccttccatatcacttcggacaacaccggaagtgaaactgtcatctccctatttaataagtccgacataatctttctaaaaagccatttagactct |
50886176 |
T |
|
| Q |
298 |
gggatgacaccgaaaaaatcacttccttcaacacctctttatctgatga |
346 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50886177 |
gagatgacaccgaaaaaatcacttccttcaacacctctttatctgatga |
50886225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University