View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14317_high_9 (Length: 346)
Name: NF14317_high_9
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 40927015 - 40926684
Alignment:
| Q |
1 |
gtgttttctttcatggcaaatgacattatgtgttcattaattactgcaaagcaaattaagtcattgataagttt-gcgtgtggttatatactcaacaatt |
99 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40927015 |
gtgttttctttcatggcaaataacattatgtgttcattaattactgcaaagcaaattaagtcattgataagttttgcgtgtggttatatactcaacaatt |
40926916 |
T |
|
| Q |
100 |
gaatgagacagaaaaatatacctataaaaccaagaaaattcttctttcttgtttaatcctcggatttttaatgctttaacaatttgaagtttggttaaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40926915 |
gaatgagacagaaaaatatacctataaaaccaagaaacttcttctttcttgtttaatcctcggatttttaatgctttaacaatttgaagtttggttaaac |
40926816 |
T |
|
| Q |
200 |
attacccaaacttatttcggtaagaaattgaactcatcctcaatgagtttaacttcaactaaaactttttaaacatttaagaatgagagatacttctgaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40926815 |
attacccaaacttatttcggtaagaaattgaactcatcctcaatgagtttaacttcaactaaaactttttaaacatttaagaatgagagatacttctgaa |
40926716 |
T |
|
| Q |
300 |
ttctcttttttgtcactatacaaatatagata |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40926715 |
ttctcttttttgtcactatacaaatatagata |
40926684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University