View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14317_low_13 (Length: 342)
Name: NF14317_low_13
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 31606195 - 31605885
Alignment:
| Q |
16 |
gatgaattacaaaccccccggcataatcaattatattcccctcgagaaagccattcccccatatagtaaaagcaccaacagtataagacaatgtaagcca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31606195 |
gatgaattacaaaccccccggcataatcaattattttcccttcgagaaagccattcccccatatagtaaaagcaccaacagtataagacaatgtaagcca |
31606096 |
T |
|
| Q |
116 |
cataggaacaaacaacatccatgcatagaaattcattctcccaagcaaagaccctccaagcaacacaagagtaattgcagcaaaagcaaattgatagaaa |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31606095 |
caaaggaacaaacaacatccatgcatagaaattcattctcccaagcaaagaccctccaagcaaaacaagagtaattgcagcaaaagcaaattgatagaaa |
31605996 |
T |
|
| Q |
216 |
acaaaatcagccattggtaaataataatttgttgatgccttagaaagtagaaacttctgactcaaggcaaagtttggctttccaacaaaaggtaaaagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31605995 |
acaaaatcagccattggtaaataataatttgttgatgccttagaaagtagaaacttctgactcaaggcaaagtttggctttccaacaaaaggtaaaagct |
31605896 |
T |
|
| Q |
316 |
tggtaccaaat |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
31605895 |
tggtaccaaat |
31605885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University