View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14317_low_15 (Length: 338)
Name: NF14317_low_15
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14317_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 45208571 - 45208739
Alignment:
| Q |
1 |
tgtggaatgtgacttgaaaggccacatcaatgtttaacgccgcacatctatctgtttaacggtcaaatttaatagaggagttaatttgatataggttaaa |
100 |
Q |
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| T |
45208571 |
tgtggaatgtgacttgaaaggacacatcaatgtttaacgccgcacatctatctgtttaacggtcaaatttaatagaggagttaatttgatataggttaaa |
45208670 |
T |
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| Q |
101 |
cacattgaggaactattttagtgtttcagattcttttgatcgggaataggattaaagggtacttcaaat |
169 |
Q |
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| T |
45208671 |
cacattgaggaactattttagtgtttcagattcttttgatcgggaataggattaaagggtacttcaaat |
45208739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 45208818 - 45208939
Alignment:
| Q |
160 |
tacttcaaattattttgatctggaatataagattgtagggctgtcc-tacttttatgcggggatacataattaagtgcttgtttggtaagttgaaatcaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45208818 |
tacttcaaattattttgatctggaatataagattaaagggctgtccctacttttatgcggggatacataattaagtgcttgtttggtaagttgaaatcaa |
45208917 |
T |
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| Q |
259 |
tcaacgtcgtaatatcaaacat |
280 |
Q |
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| T |
45208918 |
tcaatgtcgtaatatcaaacat |
45208939 |
T |
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