View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14317_low_20 (Length: 276)

Name: NF14317_low_20
Description: NF14317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14317_low_20
NF14317_low_20
[»] chr8 (5 HSPs)
chr8 (7-276)||(34389552-34389833)
chr8 (13-203)||(34866602-34866804)
chr8 (56-104)||(9519055-9519103)
chr8 (56-110)||(10551736-10551790)
chr8 (56-108)||(37987530-37987582)
[»] chr1 (5 HSPs)
chr1 (7-276)||(41919722-41920004)
chr1 (7-192)||(24685048-24685244)
chr1 (56-107)||(31586300-31586351)
chr1 (56-94)||(46693493-46693531)
chr1 (60-100)||(42373538-42373578)
[»] chr4 (5 HSPs)
chr4 (7-218)||(30963762-30963985)
chr4 (56-104)||(31051250-31051298)
chr4 (56-108)||(38929125-38929177)
chr4 (56-104)||(16501186-16501234)
chr4 (56-94)||(46699528-46699566)
[»] chr6 (2 HSPs)
chr6 (8-253)||(16510828-16511084)
chr6 (60-104)||(12793551-12793595)
[»] chr7 (6 HSPs)
chr7 (7-205)||(38305572-38305782)
chr7 (7-162)||(3420198-3420365)
chr7 (55-103)||(38484990-38485038)
chr7 (60-104)||(37792745-37792789)
chr7 (56-94)||(12480298-12480336)
chr7 (56-138)||(47326469-47326551)
[»] chr3 (5 HSPs)
chr3 (7-183)||(19175838-19176025)
chr3 (56-139)||(1653515-1653598)
chr3 (56-178)||(20611145-20611267)
chr3 (13-93)||(30935941-30936029)
chr3 (13-54)||(25595153-25595194)
[»] chr2 (4 HSPs)
chr2 (56-110)||(31902983-31903037)
chr2 (56-108)||(2062252-2062304)
chr2 (56-178)||(39339430-39339552)
chr2 (56-103)||(29486398-29486445)
[»] chr5 (1 HSPs)
chr5 (64-108)||(697716-697760)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 34389552 - 34389833
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  34389552 acatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaag 34389651  T
Q  96 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  34389652 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaaccaatggtggagcaaaaacggcagatctg 34389751  T
Q  195 aataacacttcctgtatcccgaaatcttcgacctcctcacaccacatcaccgccaccaccccaaagcaccgcaaatcagccc 276  Q
    |||||||||||| | |||| |||| | | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34389752 aataacacttcccggatcctgaaacccttgacctcctcacaccacatcaccaccaccaccccaaagcactgcaaatcagccc 34389833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 34866602 - 34866804
Alignment:
Q  13 tcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaac 101  Q
    |||||||||||||||||||||||||||||||||| |||||||            ||||||||||||||||||||||||||||||||||||||| ||||||    
T  34866602 tcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaac 34866701  T
Q  102 ccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctgaataac 200  Q
    |||| |||| | || ||||  |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||| |||    
T  34866702 ccaggtcataaaaaggcggtcgcctgtgacaaggagaatgttttcgtcgccgtagtaaaagagaatcaatggtggagcaaaaatggcggatttgaacaac 34866801  T
Q  201 act 203  Q
    |||    
T  34866802 act 34866804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 9519103 - 9519055
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 104  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||    
T  9519103 acaacaaaacacgggcagcgacgctggtttgaagcgggaacacaaccca 9519055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 10551790 - 10551736
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcat 110  Q
    |||||||| ||||||||||||||||| |||||||||||| ||| |||| ||||||    
T  10551790 acaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcat 10551736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 37987530 - 37987582
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatc 108  Q
    |||||| ||||||||||||||||||||| |||||||||| | ||||| |||||    
T  37987530 acaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatc 37987582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 41920004 - 41919722
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||| ||||||||||||||     
T  41920004 acatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaac 41919905  T
Q  96 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 194  Q
    ||||||||||||||| | |  ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  41919904 cacaacccagatcattaaatggcggcagcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctg 41919805  T
Q  195 aataacacttcctgtatcccgaaatcttcgacctcctcacaccacatcaccgccacca-ccccaaagcaccgcaaatcagccc 276  Q
    || ||||||| | | ||||||||| | | |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  41919804 aacaacacttaccggatcccgaaacccttgacctcctcacaccacatcaccaccaccacccccaaagcaccgcaaaccagccc 41919722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 24685048 - 24685244
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagag-gagacaa----------caaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||          ||||||||||||||||||||||||||||||| |||     
T  24685048 acatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaac 24685147  T
Q  96 cacaacccagatcatgacaaagc-ggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatc 192  Q
    ||||||||| ||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  24685148 cacaacccatatcat-aaaaagctggccgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaatggcggatc 24685244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 31586300 - 31586351
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagat 107  Q
    |||||||||||||||||||||||||||| |||||||| | ||| ||||||||    
T  31586300 acaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 46693493 - 46693531
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaa 94  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  46693493 acaacagaacacgggcagcgacgccggtctgaagcggaa 46693531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 42373578 - 42373538
Alignment:
Q  60 caaaacacgggcagcgacgccggtttgaagcggaagcacaa 100  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  42373578 caaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 30963985 - 30963762
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||            || |||||||||||||| |||||||||||||||| ||||     
T  30963985 acatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaac 30963886  T
Q  96 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 194  Q
    ||||||||||||||| | ||   ||  ||||||||||||||||||| |||||| |  |||||||||||||||||||||||||| ||||| ||| ||||||    
T  30963885 cacaacccagatcataaaaagatggtcgcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctg 30963786  T
Q  195 aataacacttcctgtatcccgaaa 218  Q
    || | ||||||||| ||| |||||    
T  30963785 aacagcacttcctgaatcgcgaaa 30963762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 31051250 - 31051298
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 104  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||||    
T  31051250 acaacaaaacacgggcagcgacgccggtctgaagcggacacacaaccca 31051298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 38929177 - 38929125
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatc 108  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||| |||||    
T  38929177 acaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctagatc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 16501234 - 16501186
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 104  Q
    |||||| |||| |||||||||||||||||||||| |||| |||||||||    
T  16501234 acaacacaacatgggcagcgacgccggtttgaagtggaatcacaaccca 16501186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 46699528 - 46699566
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaa 94  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  46699528 acaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 16510828 - 16511084
Alignment:
Q  8 catcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaagc 96  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||| ||||||||||||| ||| |    
T  16510828 catcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaacc 16510927  T
Q  97 acaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctga 195  Q
    |||||||| ||||| | || || |  || ||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||| ||| | |||||    
T  16510928 acaacccatatcataaaaaggcagtcgcttgtgacaaggagaatgtgttcatctccgtagtaaaagagaaacaatggtggagcaaaaacggcggttctga 16511027  T
Q  196 ataacacttcctgtatcccgaaatcttcgacctcctcacaccacatcaccgccaccac 253  Q
    | | ||||||| | | ||||||| |   | |||||||| ||||||||||| |||||||    
T  16511028 acagcacttcccggaacccgaaacccgtgtcctcctca-accacatcaccaccaccac 16511084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 12793595 - 12793551
Alignment:
Q  60 caaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 104  Q
    ||||||||||||| ||||||| |||||||||| || |||||||||    
T  12793595 caaaacacgggcaacgacgccagtttgaagcgaaaacacaaccca 12793551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 38305782 - 38305572
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||            |||||||||||| |||||| |||||||||||||||||||     
T  38305782 acatcctcaccaagaaacaagcaacaacacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaac 38305683  T
Q  96 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 194  Q
    ||||||||| |||||   || ||||| | ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||| ||| ||| ||    
T  38305682 cacaacccatatcatttaaaggcggccgactgtgacaacgagaatgcgttcgtcgccgtagtaaaagagagccaatggtggagcaaaaacggcggatatg 38305583  T
Q  195 aataacacttc 205  Q
    || | ||||||    
T  38305582 aacagcacttc 38305572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 3420198 - 3420365
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| |||||||||||||||||||||||||  ||||||| |||||||            ||||||||||||| ||||||||||||||| |||||||||     
T  3420198 acatcctcaccaagaaacaagcaacaacacatgcataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaac 3420297  T
Q  96 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaaga 162  Q
    ||||||| ||||||| | || ||||   ||||| ||| |||||||| |||||| ||||||||||||||    
T  3420298 cacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgttcgtcgccgtagtaaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 38485038 - 38484990
Alignment:
Q  55 gacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccc 103  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38485038 gacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc 38484990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 37792789 - 37792745
Alignment:
Q  60 caaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 104  Q
    |||||||||| || ||||||||||||||||||||| |||||||||    
T  37792789 caaaacacggacaacgacgccggtttgaagcggaaacacaaccca 37792745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 12480336 - 12480298
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaa 94  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  12480336 acaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 47326469 - 47326551
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggaga 138  Q
    |||||||||||||||||||||| ||| ||||||| | || ||||||| | |||||   || ||||| ||| ||||||||||||    
T  47326469 acaacaaaacacgggcagcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 19176025 - 19175838
Alignment:
Q  7 acatcatcaccaagaaacaagcaacaacacaaacataaatctagagg-agacaa----------caaaacacgggcagcgacgccggtttgaagcggaag 95  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||          ||||||||||||||||| |||||||||||| ||||     
T  19176025 acatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaac 19175926  T
Q  96 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaa 183  Q
    ||||||||| ||||| | || || || |||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  19175925 cacaacccatatcataaaaaggcagccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaa 19175838  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 1653515 - 1653598
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaa 139  Q
    ||||||||||||||||| |||||||||||||||||| ||  |||||||||||| | |||| |  || ||| |||||||||||||    
T  1653515 acaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaaggttgccgccagtgacaaggagaa 1653598  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 20611267 - 20611145
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgta 154  Q
    ||||||||||||| ||||||||| |||||||||| | |||||||||| | |||||   || ||||| |||  |||||||||| | | |||||| | || |    
T  20611267 acaacaaaacacgagcagcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggccgccgatgacaaggag-aggcgttcgtcggcgga 20611169  T
Q  155 gtaaaagagaaccaatggtggagc 178  Q
    ||||||||||||||||||||||||    
T  20611168 gtaaaagagaaccaatggtggagc 20611145  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 30935941 - 30936029
Alignment:
Q  13 tcaccaagaaacaagcaacaacacaaacataaatctagagga--------gacaacaaaacacgggcagcgacgccggtttgaagcgga 93  Q
    |||||||||||||  |||||||| ||||||||||||||||||         |||||||||||||| ||||||||||||| ||| |||||    
T  30935941 tcaccaagaaacagacaacaacaaaaacataaatctagaggacgaaacccaacaacaaaacacggacagcgacgccggtctgaggcgga 30936029  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 25595153 - 25595194
Alignment:
Q  13 tcaccaagaaacaagcaacaacacaaacataaatctagagga 54  Q
    ||||||||||||||||| ||||||||| | ||||||||||||    
T  25595153 tcaccaagaaacaagcagcaacacaaaaacaaatctagagga 25595194  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 31902983 - 31903037
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcat 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  31902983 acaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcat 31903037  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 2062304 - 2062252
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatc 108  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2062304 acaacaaaacacgggcagcgacgccggtctgaagcggaaacacaacccagatc 2062252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 39339430 - 39339552
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgta 154  Q
    ||||||||||||| ||||||||| |||||||||| | || ||||||| | |||||   || ||||| ||| ||||||||||||  | |||||| | || |    
T  39339430 acaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggagag-gcgttcgtcggcgga 39339528  T
Q  155 gtaaaagagaaccaatggtggagc 178  Q
    ||||||||||||||||||||||||    
T  39339529 gtaaaagagaaccaatggtggagc 39339552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 29486445 - 29486398
Alignment:
Q  56 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccc 103  Q
    ||||||||||  |||||||||||||||| |||||||||| ||||||||    
T  29486445 acaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 697760 - 697716
Alignment:
Q  64 acacgggcagcgacgccggtttgaagcggaagcacaacccagatc 108  Q
    |||||||||||||||||||| |||||||||| | ||||| |||||    
T  697760 acacgggcagcgacgccggtctgaagcggaaactcaacctagatc 697716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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